Help:Uploading molecules: Difference between revisions
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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Choose a '''file name''' carefully and put it in the ''Destination filename'' slot. The filename should be unique enough to distinguish it from all the other hundreds of files uploaded into Proteopedia, and descriptive enough to identify it. Do not include spaces in the filename -- use underscores or dashes to separate words. The filename should end in '''.pdb''' (or another file type that identifies the data format), or if compressed, '''.pdb.zip''' or the filetype that identifies the compression method. | Choose a '''file name''' carefully and put it in the ''Destination filename'' slot. The filename should be unique enough to distinguish it from all the other hundreds of files uploaded into Proteopedia, and descriptive enough to identify it. Do not include spaces in the filename -- use underscores or dashes to separate words. The filename should end in '''.pdb''' (or another file type that identifies the data format), or if compressed, '''.pdb.zip''' or the filetype that identifies the compression method. | ||
:If you are uploading an unpublished PDB file that is to be hidden until the date of publication, the filename should begin with "Workbench_" (see [[Proteopedia:Workbench]]). | :If (and only if!) you are uploading an unpublished PDB file that is to be hidden until the date of publication, the filename should begin with "Workbench_" (see [[Proteopedia:Workbench]]). | ||
Good filenames (unique, descriptive): | |||
<ul><li> | |||
Taxa_4_11_dien_5A_13A_diol.pdb | |||
</li></ul> | |||
Poor filenames (too general, not descriptive): | |||
<ul><li> | |||
Image:X.pdb | |||
</li><li> | </li><li> | ||
'''Describe''' the contents of the file in the ''Summary'' box. You could tell how it was obtained or generated, cite the source, and specify any restrictions on the use of the file imposed by the copyright holder. | Image:Complex.pdb | ||
</li><li> | |||
Image:1A6Z.pdb.gz (NO uploaded file should have the same name as a published [[PDB]] entry.) | |||
</li></ul> | |||
</li><li> | |||
'''Describe''' the contents of the file in the ''Summary'' box. You could tell how it was obtained or generated, cite the source, and specify any restrictions on the use of the file imposed by the copyright holder. If the filename includes a [[PDB code]], explain how the contents differ from the published [[PDB]] entry. | |||
</li><li> | </li><li> | ||
Click the '''Upload file button'''. You will next see a page about the uploaded file. In Proteopedia, every uploaded file (regardless of the type of content) is stored in the ''Image:'' [[Proteopedia:namespaces|namespace]]. | Click the '''Upload file button'''. You will next see a page about the uploaded file. In Proteopedia, every uploaded file (regardless of the type of content) is stored in the ''Image:'' [[Proteopedia:namespaces|namespace]]. | ||
</li><li> | </li></ol> | ||
Copy the full filename as shown in the title of the uploaded file page. | |||
=Create a molecular scene showing the uploaded PDB file= | |||
<ol><li> | |||
'''Copy''' the full filename as shown in the title of the uploaded file page. | |||
:If you don't have the full uploaded filename in front of you, here is how you can find it. Click on your name at the top of the window. This takes you to your User page. | |||
</li><li> | </li><li> | ||
</li><li> | </li><li> | ||