User:Wayne Decatur/NASCE2011: Difference between revisions

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**Open-ended Gateway

*** learn of a structure in a meeting (Robert Milllar talk on Saturday) ---> [http://www.ncbi.nlm.nih.gov/pubmed/17962520 Pubmed search result]---> [[2rh1]]

****Sites

****Consurf

****Firstglance in Jmol

****Consurf

***[http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html new publication] ---> [[3rze]] Sites

***[http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html new publication] ---> [[3rze]]

**** note where link to 3D structure at [http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html Nature publication] goes

**Student aid - [[Proteopedia:Table of Contents]] -->Metabolism -->[[Carbohydrate Metabolism]] -->[[Citric Acid Cycle]]--> [[Citrate Synthase]] morphs and reaction steps in second section

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==PDB Entry Pages==

*Proteopedia has an entry for every PDB entry (nearly 75,000) with interactive scene links and links to useful resources

** Example ~~[[1m10]]~~

** Example [[1p3v]] (PDB 4 digit alphanumeric accession number)

**Random Example: [[1p3v]] (PDB 4 digit alphanumeric accession number)

***Conservation: , explanation, and see also [http://consurfdb.tau.ac.il/comparison.php The ConSurf Database] and [http://consurf.tau.ac.il/ The ConSurf Server] Other examples: [[4enl]] or [[5cyt]]

***Show how to use Consurf

==FirstGlance in Jmol==

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==Proteopedia Scene Authoring==

*[[Scene authoring tools|Proteopedia's Scene Authoring Tools]]

**Load a structure [[~~2zi0~~]] or previous scene

**Load a structure [[3ciy]] or previous scene

**Set your scene. Undo/Redo features.

**Save your scene

**Add the scene to the page

*Try it out and then add and improve. Repeat.

==Time permitting==

@@ Line 13: / Line 13: @@
 **Open-ended Gateway
 *** learn of a structure in a meeting (Robert Milllar talk on Saturday) ---> [http://www.ncbi.nlm.nih.gov/pubmed/17962520 Pubmed search result]---> [[2rh1]]
+****Sites
+****Consurf
 ****Firstglance in Jmol
-****Consurf
+***[http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html new publication] ---> [[3rze]] Sites
-***[http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html new publication] ---> [[3rze]]
 **** note where link to 3D structure at [http://www.nature.com/nature/journal/v475/n7354/full/nature10236.html Nature publication] goes
 **Student aid - [[Proteopedia:Table of Contents]] -->Metabolism -->[[Carbohydrate Metabolism]] -->[[Citric Acid Cycle]]--> [[Citrate Synthase]] morphs and reaction steps in second section
@@ Line 93: / Line 94: @@
 ==PDB Entry Pages==
 *Proteopedia has an entry for every PDB entry (nearly 75,000) with interactive scene links and links to useful resources
-** Example [[1m10]]
+** Example  [[1p3v]] (PDB 4 digit alphanumeric accession number)
-**Random Example:  [[1p3v]] (PDB 4 digit alphanumeric accession number)
 ***Conservation: , explanation, and see also [http://consurfdb.tau.ac.il/comparison.php The ConSurf Database] and [http://consurf.tau.ac.il/ The ConSurf Server]  Other examples: [[4enl]] or [[5cyt]]
+***Show how to use Consurf
 ==FirstGlance in Jmol==
@@ Line 126: / Line 127: @@
 ==Proteopedia Scene Authoring==
 *[[Scene authoring tools|Proteopedia's Scene Authoring Tools]]
-**Load a structure [[2zi0]] or previous scene
+**Load a structure [[3ciy]] or previous scene
 **Set your scene. Undo/Redo features.
 **Save your scene
 **Add the scene to the page
 *Try it out and then add and improve. Repeat.
 ==Time permitting==