User:Eric Martz/Sandbox 13: Difference between revisions
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
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# colors that indicate identity/similarity/difference | # colors that indicate identity/similarity/difference | ||
# ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...) | # ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...) | ||
== Uniprot.org == | |||
*no % ident | |||
*gray colors | |||
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*no % id (?!) | *no % id (?!) | ||
*give a ''score'' but doesn't explain it. | *give a ''score'' but doesn't explain it. | ||
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*Smith-Waterman shows only the aligned segments, while Needleman-Wunsch shows full length with gaps. | *Smith-Waterman shows only the aligned segments, while Needleman-Wunsch shows full length with gaps. | ||
Swiss-Model | |||
== Swiss-Model == | |||
Why doesn't it make a model of FlgE CamJe using 1wlg? | Why doesn't it make a model of FlgE CamJe using 1wlg? | ||
<pre> | |||
>tr|Q0P7Q2|Q0P7Q2_CAMJE Flagellar hook subunit protein OS=Campylobacter jejuni GN=flgE2 PE=1 SV=1 | |||
MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG | |||
GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF | |||
KLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAIKANLN | |||
SGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVDAGSLF | |||
NAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDPNLQQNQTAAFWGTANQKVNLDITL | |||
NGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVNDNADGTTDNM | |||
KNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSLWTATNITFTP | |||
QPPQAATNVQLTGGLNAQIITAHKYIYSSNPVDIGPMYNPDGGPAFQPGANATTRPTEPG | |||
SAAYWDAVNGGLLNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVT | |||
ADGHFAISNANEQSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFK | |||
AFDGPLVIGNQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMII | |||
RVPEPAEINTTGEGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTS | |||
GSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMAS | |||
VANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQ | |||
RGYQANSKTISTSDQMLQTLIQLKQ | |||
>sp|P0A1J1|FLGE_SALTY Flagellar hook protein flgE OS=Salmonella typhimurium GN=flgE PE=1 SV=2 | |||
MSFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQD | |||
FTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYP | |||
ATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNK | |||
KGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGILES | |||
GGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTV | |||
VGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGA | |||
LEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR | |||
</pre> | |||