Ramachandran Plot: Difference between revisions
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#Click in the lower text window of the console that comes up and type the command '''<code>Ramachandran</code>''', followed by the return key. | #Click in the lower text window of the console that comes up and type the command '''<code>Ramachandran</code>''', followed by the return key. | ||
#After some processing the Ramachandran plot will be visible and you can hover over and click on the points in the plot just as you can with atoms in a Jmol scene window. (To return to the model, an easy solution is to reload the page or open a new browser instance of that page, or enter into the console 'model 1.1' without the quotes.) | #After some processing the Ramachandran plot will be visible and you can hover over and click on the points in the plot just as you can with atoms in a Jmol scene window. (To return to the model, an easy solution is to reload the page or open a new browser instance of that page, or enter into the console 'model 1.1' without the quotes.) | ||
#To limit the plot to displaying certain residues or portions of the structure, you can issue commands in the console, such as 'display helix' or 'display gly'. The latter command will limit the plotted display to just glycine residues. The return to showing all values on the plot, issue the command 'display all'. | |||
This method to generate interactive Ramachandran plots will also work for other instances of the Jmol applet elsewhere on the web as long as the version of the Jmol is 11.4 or greater.<br> | This method to generate interactive Ramachandran plots will also work for other instances of the Jmol applet elsewhere on the web as long as the version of the Jmol is 11.4 or greater.<br> | ||