2v9p: Difference between revisions
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==About this Structure== | ==About this Structure== | ||
2V9P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bovine_papillomavirus_type_2 Bovine papillomavirus type 2] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Po4 Binding Site For Chain A'>AC1</scene>, <scene name='pdbsite=AC2:Po4 Binding Site For Chain A'>AC2</scene>, <scene name='pdbsite=AC3:Mg Binding Site For Chain A'>AC3</scene>, <scene name='pdbsite=AC4:Po4 Binding Site For Chain B'>AC4</scene>, <scene name='pdbsite=AC5:Po4 Binding Site For Chain B'>AC5</scene>, <scene name='pdbsite=AC6:Mg Binding Site For Chain B'>AC6</scene>, <scene name='pdbsite=AC7:Po4 Binding Site For Chain C'>AC7</scene>, <scene name='pdbsite=AC8:Po4 Binding Site For Chain C'>AC8</scene>, <scene name='pdbsite=AC9:Mg Binding Site For Chain C'>AC9</scene>, <scene name='pdbsite=BC1:Po4 Binding Site For Chain D'>BC1</scene>, <scene name='pdbsite=BC2:Po4 Binding Site For Chain E'>BC2</scene>, <scene name='pdbsite=BC3:Po4 Binding Site For Chain F'>BC3</scene>, <scene name='pdbsite=BC4:Po4 Binding Site For Chain G'>BC4</scene>, <scene name='pdbsite=BC5:Po4 Binding Site For Chain G'>BC5</scene>, <scene name='pdbsite=BC6:Mg Binding Site For Chain G'>BC6</scene>, <scene name='pdbsite=BC7:Po4 Binding Site For Chain H'>BC7</scene>, <scene name='pdbsite=BC8:Po4 Binding Site For Chain H'>BC8</scene>, <scene name='pdbsite=BC9:Mg Binding Site For Chain H'>BC9</scene>, <scene name='pdbsite=CC1:Po4 Binding Site For Chain I'>CC1</scene>, <scene name='pdbsite=CC2:Po4 Binding Site For Chain I'>CC2</scene>, <scene name='pdbsite=CC3:Mg Binding Site For Chain I'>CC3</scene>, <scene name='pdbsite=CC4:Po4 Binding Site For Chain J'>CC4</scene>, <scene name='pdbsite=CC5:Po4 Binding Site For Chain K'>CC5</scene> and <scene name='pdbsite=CC6:Po4 Binding Site For Chain L'>CC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V9P OCA]. | 2V9P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bovine_papillomavirus_type_2 Bovine papillomavirus type 2] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Po4+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Po4+Binding+Site+For+Chain+B'>AC4</scene>, <scene name='pdbsite=AC5:Po4+Binding+Site+For+Chain+B'>AC5</scene>, <scene name='pdbsite=AC6:Mg+Binding+Site+For+Chain+B'>AC6</scene>, <scene name='pdbsite=AC7:Po4+Binding+Site+For+Chain+C'>AC7</scene>, <scene name='pdbsite=AC8:Po4+Binding+Site+For+Chain+C'>AC8</scene>, <scene name='pdbsite=AC9:Mg+Binding+Site+For+Chain+C'>AC9</scene>, <scene name='pdbsite=BC1:Po4+Binding+Site+For+Chain+D'>BC1</scene>, <scene name='pdbsite=BC2:Po4+Binding+Site+For+Chain+E'>BC2</scene>, <scene name='pdbsite=BC3:Po4+Binding+Site+For+Chain+F'>BC3</scene>, <scene name='pdbsite=BC4:Po4+Binding+Site+For+Chain+G'>BC4</scene>, <scene name='pdbsite=BC5:Po4+Binding+Site+For+Chain+G'>BC5</scene>, <scene name='pdbsite=BC6:Mg+Binding+Site+For+Chain+G'>BC6</scene>, <scene name='pdbsite=BC7:Po4+Binding+Site+For+Chain+H'>BC7</scene>, <scene name='pdbsite=BC8:Po4+Binding+Site+For+Chain+H'>BC8</scene>, <scene name='pdbsite=BC9:Mg+Binding+Site+For+Chain+H'>BC9</scene>, <scene name='pdbsite=CC1:Po4+Binding+Site+For+Chain+I'>CC1</scene>, <scene name='pdbsite=CC2:Po4+Binding+Site+For+Chain+I'>CC2</scene>, <scene name='pdbsite=CC3:Mg+Binding+Site+For+Chain+I'>CC3</scene>, <scene name='pdbsite=CC4:Po4+Binding+Site+For+Chain+J'>CC4</scene>, <scene name='pdbsite=CC5:Po4+Binding+Site+For+Chain+K'>CC5</scene> and <scene name='pdbsite=CC6:Po4+Binding+Site+For+Chain+L'>CC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V9P OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: replication]] | [[Category: replication]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:50:42 2008'' | ||
Revision as of 11:50, 3 February 2008
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CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASE DNA-FREE FORM
OverviewOverview
Concerted, stochastic and sequential mechanisms of action have been, proposed for different hexameric AAA+ molecular motors. Here we report the, crystal structure of the E1 helicase from bovine papillomavirus, where, asymmetric assembly is for the first time observed in the absence of, nucleotide cofactors and DNA. Surprisingly, the ATP-binding sites adopt, specific conformations linked to positional changes in the DNA-binding, hairpins, which follow a wave-like trajectory, as observed previously in, the E1/DNA/ADP complex. The protein's assembly thus maintains such an, asymmetric state in the absence of DNA and nucleotide cofactors, allowing, consideration of the E1 helicase action as the propagation of a, conformational wave around the protein ring. The data imply that the, wave's propagation within the AAA+ domains is not necessarily coupled with, a strictly sequential hydrolysis of ATP. Since a single ATP hydrolysis, event would affect the whole hexamer, such events may simply serve to, rectify the direction of the wave's motion.
About this StructureAbout this Structure
2V9P is a Single protein structure of sequence from Bovine papillomavirus type 2 with and as ligands. Known structural/functional Sites: , , , , , , , , , , , , , , , , , , , , , , and . Full crystallographic information is available from OCA.
ReferenceReference
Papillomavirus E1 helicase assembly maintains an asymmetric state in the absence of DNA and nucleotide cofactors., Sanders CM, Kovalevskiy OV, Sizov D, Lebedev AA, Isupov MN, Antson AA, Nucleic Acids Res. 2007 Sep 19;. PMID:17881379
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