2vdf: Difference between revisions
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==About this Structure== | ==About this Structure== | ||
2VDF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=OCT:'>OCT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Oct Binding Site For Chain A'>AC1</scene> and <scene name='pdbsite=AC2:So4 Binding Site For Chain A'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDF OCA]. | 2VDF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=OCT:'>OCT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Oct+Binding+Site+For+Chain+A'>AC1</scene> and <scene name='pdbsite=AC2:So4+Binding+Site+For+Chain+A'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDF OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: outer membrane]] | [[Category: outer membrane]] | ||
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Revision as of 11:51, 3 February 2008
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STRUCTURE OF THE OPCA ADHESION FROM NEISSERIA MENINGITIDIS DETERMINED BY CRYSTALLIZATION FROM THE CUBIC MESOPHASE
OverviewOverview
OpcA is an integral outer membrane adhesin protein from Neisseria, meningitidis, the causative agent of meningococcal meningitis and, septicemia. It binds to sialic acid (SA)-containing polysaccharides on the, surface of epithelial cells. The crystal structure of OpcA showed that the, protein adopts a 10-stranded beta-barrel structure, with five extensive, loop regions on the extracellular side of the membrane. These form a, crevice structure, lined with basic residues, which was hypothesized to, act as the binding site for polysaccharide ligands. In the current study, a distinctly different OpcA structure has been obtained using crystals, grown from a lipidic mesophase. Comparison of the two structures shows, that the largest loop (L2), which closes over the end of the beta-barrel, in the original crystal form, adopts a much more extended structure by, reaching outward and away from the protein. The difference in conformation, may be attributable to the absence of zinc ions from the crystallization, conditions for the in meso crystal form: in the original structure, two, zinc ions were bound to the external loops. Molecular dynamics (MD), simulations performed on the two OpcA models in a lipid bilayer, environment demonstrated pronounced loop mobility. These observations, support the view that the loop regions of OpcA are capable of a high, degree of conformational flexibility. The original binding site for, polysaccharide is not present in the in meso crystal form, and is, disrupted during MD simulations. Docking analysis suggests a putative, alternative location for the SA ligand in the new crystal form of OpcA., Proteins 2007. (c) 2007 Wiley-Liss, Inc.
About this StructureAbout this Structure
2VDF is a Single protein structure of sequence from Neisseria meningitidis with and as ligands. Known structural/functional Sites: and . Full crystallographic information is available from OCA.
ReferenceReference
In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin., Cherezov V, Liu W, Derrick JP, Luan B, Aksimentiev A, Katritch V, Caffrey M, Proteins. 2007 Dec 12;. PMID:18076035
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