Structure superposition tools: Difference between revisions
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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If you want automated selection of a small subdomain with the best possible alignment, try [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]]'s ''Explore Domain Alternate Fits'' or ''Iterative Magic Fit'' (see results in the [[#DeepView = Swiss-PDBViewer example|DeepView = Swiss-PDBViewer example]]). | If you want automated selection of a small subdomain with the best possible alignment, try [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]]'s ''Explore Domain Alternate Fits'' or ''Iterative Magic Fit'' (see results in the [[#DeepView = Swiss-PDBViewer example|DeepView = Swiss-PDBViewer example]]). | ||
===DNA structural alignment=== | |||
None of the above servers does structural alignment of DNA, but [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] does (Iterative Magic Fit). | |||
===Multiple chain structural alignment=== | |||
CE and FATCAT align only one chain at a time. DaliLite appears to align multiple chains, although the output is confusing and not clearly labeled. [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] can align multiple chains, including both protein and DNA chains in a single alignment (Iterative Magic Fit). | |||
==Structural Alignment Servers== | ==Structural Alignment Servers== | ||