3lbn: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:3lbn.png|left|200px]] | [[Image:3lbn.png|left|200px]] | ||
{{STRUCTURE_3lbn| PDB=3lbn | SCENE= }} | {{STRUCTURE_3lbn| PDB=3lbn | SCENE= }} | ||
===Ras soaked in Magnesium Acetate=== | ===Ras soaked in Magnesium Acetate=== | ||
{{ABSTRACT_PUBMED_20194776}} | {{ABSTRACT_PUBMED_20194776}} | ||
==About this Structure== | ==About this Structure== | ||
[[3lbn]] is a 1 chain structure of [[GTPase HRas]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LBN OCA]. | |||
==See Also== | |||
*[[GTPase HRas|GTPase HRas]] | |||
==Reference== | ==Reference== | ||
<ref group="xtra">PMID: | <ref group="xtra">PMID:020194776</ref><references group="xtra"/> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Buhrman, G.]] | [[Category: Buhrman, G.]] | ||
[[Category: Holzapfel, G.]] | [[Category: Holzapfel, G.]] | ||
[[Category: Mattos, C.]] | [[Category: Mattos, C.]] | ||
[[Category: Cell membrane]] | [[Category: Cell membrane]] | ||
[[Category: Disease mutation]] | [[Category: Disease mutation]] | ||
| Line 43: | Line 33: | ||
[[Category: Proto-oncogene]] | [[Category: Proto-oncogene]] | ||
[[Category: S-nitrosylation]] | [[Category: S-nitrosylation]] | ||
Revision as of 12:45, 27 July 2012
Ras soaked in Magnesium AcetateRas soaked in Magnesium Acetate
Ras and its effector Raf are key mediators of the Ras/Raf/MEK/ERK signal transduction pathway. Mutants of residue Q61 impair the GTPase activity of Ras and are found prominently in human cancers. Yet the mechanism through which Q61 contributes to catalysis has been elusive. It is thought to position the catalytic water molecule for nucleophilic attack on the gamma-phosphate of GTP. However, we previously solved the structure of Ras from crystals with symmetry of the space group R32 in which switch II is disordered and found that the catalytic water molecule is present. Here we present a structure of wild-type Ras with calcium acetate from the crystallization mother liquor bound at a site remote from the active site and likely near the membrane. This results in a shift in helix 3/loop 7 and a network of H-bonding interactions that propagates across the molecule, culminating in the ordering of switch II and placement of Q61 in the active site in a previously unobserved conformation. This structure suggests a direct catalytic role for Q61 where it interacts with a water molecule that bridges one of the gamma-phosphate oxygen atoms to the hydroxyl group of Y32 to stabilize the transition state of the hydrolysis reaction. We propose that Raf together with the binding of Ca(2+) and a negatively charged group mimicked in our structure by the acetate molecule induces the ordering of switch I and switch II to complete the active site of Ras.
Allosteric modulation of Ras positions Q61 for a direct role in catalysis., Buhrman G, Holzapfel G, Fetics S, Mattos C, Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):4931-6. Epub 2010 Mar 1. PMID:20194776
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
About this StructureAbout this Structure
3lbn is a 1 chain structure of GTPase HRas with sequence from Homo sapiens. Full crystallographic information is available from OCA.