Proteopedia:Problems: Difference between revisions
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==Problems, more urgent== | ==Problems, more urgent== | ||
'''Non-standard residues''' should be limited to residues that are also protein or nucleic. For example in [[1au1]], BGC and G6D are carbohydrate and hence should be listed under Ligands instead of Non-Standard Residues. (See [[Non-Standard Residues]] and [[Ligands]] for more examples.) [[User:Eric Martz|Eric Martz]] 21:24, 21 March 2010 (IST) | <span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Non-standard residues''' should be limited to residues that are also protein or nucleic. For example in [[1au1]], BGC and G6D are carbohydrate and hence should be listed under Ligands instead of Non-Standard Residues. (See [[Non-Standard Residues]] and [[Ligands]] for more examples.) [[User:Eric Martz|Eric Martz]] 21:24, 21 March 2010 (IST). Page for [[1au1]] was reseeded. The correction will gradually propagate to other pages. [[User:Jaime Prilusky|Jaime Prilusky]] 12:39, 22 March 2010 (IST) | ||
<span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Wrong chains''': When you ''show Evolutionary Conservation'' for [[4cpa]], the chain toggle buttons are listed A, C, B, D. However, the actual chains in this PDB file are A, B, I, J. Similarly, the buttons are A, B for [[1apm]] where the actual chains are E and I. Also [[1acb]] where the chains are E and I (not A and B). [[User:Eric Martz|Eric Martz]] 03:18, 2 January 2010 (IST) :This is a related problem to the latest PDB file remediation. Solved for these structures but there might be others [[User:Jaime Prilusky|Jaime Prilusky]] 08:27, 3 January 2010 (IST) | <span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Wrong chains''': When you ''show Evolutionary Conservation'' for [[4cpa]], the chain toggle buttons are listed A, C, B, D. However, the actual chains in this PDB file are A, B, I, J. Similarly, the buttons are A, B for [[1apm]] where the actual chains are E and I. Also [[1acb]] where the chains are E and I (not A and B). [[User:Eric Martz|Eric Martz]] 03:18, 2 January 2010 (IST) :This is a related problem to the latest PDB file remediation. Solved for these structures but there might be others [[User:Jaime Prilusky|Jaime Prilusky]] 08:27, 3 January 2010 (IST) | ||