Molecular Playground/Procedures: Difference between revisions

This procedure assumes that you have followed the procedure above to create a script ''MP_yourMolecule.spt'' (where ''yourMolecule'' is the name of the molecule that you are displaying). Here is detailed how to display that script in a page in Proteopedia, which can become the web page that you offer for more information to those MP onlookers who visit [http://molecularplayground.org MolecularPlayground.Org].

'''Specify ''proteopediaStateScript'':''' In your script ''MP_yourMolecule.spt'' is the variable ''proteopediaStateScript'' that specifies the filepath for your state script on the Proteopedia server. Go to the page where you developed your molecular scene, and display your scene in Jmol on that page. Click on the word ''Jmol'' to the lower right of the molecule, to raise Jmol's menu. On the menu, click on '''Show, History'''. The white ''Jmol Script Console'' will open, showing the filepath. Copy only the part beginning "/wiki...", excluding the word "script" and the semicolon at the end. On '''Macs, copy with Ctrl-C''' not Cmd-C. Paste it into ''MP_yourMolecule.spt'' between the double quotes for the value of ''proteopediaStateScript''. On Macs, you will need to drag the blocked filepath and drop it into your [[Help:Plain text editors|text editing program]]. For a concrete example of what this should look like, see [http://proteopedia.org/wiki/images/5/54/MP_relenza03.spt MP_relenza03.spt].