User:Wayne Decatur/Homology Modeling: Difference between revisions

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*[http://biskit.pasteur.fr/use/workflows/homology-modelling Biskit that uses python for homology modeling]

*[http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07070.html note on Pymol for homology modeling]

*[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand.

*[http://salilab.org/modeller/ Modeller]

*[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewe (DeepView)]

*[http://www.yasara.org/homologymodeling.htm Yasara to homology model]

*[http://www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site]

==See Also==

* [[Homology model]]

* [[Molecular modeling and visualization software]]

* [http://en.wikipedia.org/wiki/List_of_software_for_molecular_mechanics_modeling List of software for molecular mechanics modeling] at Wikipeida although thoroughness and how current it is are subject to question by the inclusion of RasMol which is simply a viewer with no modeling abilities that has been supplanted by better viewers such as Chime and Jmol not included on the list.

@@ Line 8: / Line 8: @@
 *[http://biskit.pasteur.fr/use/workflows/homology-modelling Biskit that uses python for homology modeling]
 *[http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07070.html note on Pymol for homology modeling]
+*[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand.
 *[http://salilab.org/modeller/ Modeller]
 *[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewe (DeepView)]
 *[http://www.yasara.org/homologymodeling.htm Yasara to homology model]
 *[http://www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site]
+==See Also==
+* [[Homology model]]
+* [[Molecular modeling and visualization software]]
+* [http://en.wikipedia.org/wiki/List_of_software_for_molecular_mechanics_modeling List of software for molecular mechanics modeling] at Wikipeida although thoroughness and how current it is are subject to question by the inclusion of RasMol which is simply a viewer with no modeling abilities that has been supplanted by better viewers such as Chime and Jmol not included on the list.