3ird: Difference between revisions

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-{{Seed}}
-[[Image:3ird.jpg|left|200px]]
-<!--
+==Structure of dihydrodipicolinate synthase from Clostridium botulinum==
-The line below this paragraph, containing "STRUCTURE_3ird", creates the "Structure Box" on the page.
+<StructureSection load='3ird' size='340' side='right'caption='[[3ird]], [[Resolution|resolution]] 2.23&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ird]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum_A_str._Hall Clostridium botulinum A str. Hall]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3bi8 3bi8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IRD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.23&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_3ird|  PDB=3ird  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ird FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ird OCA], [https://pdbe.org/3ird PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ird RCSB], [https://www.ebi.ac.uk/pdbsum/3ird PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ird ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A5I6N2_CLOBH A5I6N2_CLOBH] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).[HAMAP-Rule:MF_00418][SAAS:SAAS00021616]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ird_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ird ConSurf].
+<div style="clear:both"></div>
-===Structure of dihydrodipicolinate synthase from Clostridium botulinum===
+==See Also==
+*[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-IRD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_a_str._hall Clostridium botulinum a str. hall]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3bi8 3bi8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRD OCA].
+[[Category: Clostridium botulinum A str. Hall]]
-[[Category: Clostridium botulinum a str. hall]]
+[[Category: Large Structures]]
-[[Category: Dihydrodipicolinate synthase]]
+[[Category: Atkinson S]]
-[[Category: Atkinson, S.]]
+[[Category: Dobson RCJ]]
-[[Category: Dobson, R C.J.]]
+[[Category: Perugini MA]]
-[[Category: Perugini, M A.]]
-[[Category: Amino-acid biosynthesis]]
-[[Category: Clostridium botulinum]]
-[[Category: Cytoplasm]]
-[[Category: Diaminopimelate biosynthesis]]
-[[Category: Dihydrodipicolinate synthase]]
-[[Category: Lyase]]
-[[Category: Lysine biosynthesis]]
-[[Category: Schiff base]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:39:07 2009''