3ibs: Difference between revisions

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[[Image:3ibs.png|left|200px]]


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==Crystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicron==
The line below this paragraph, containing "STRUCTURE_3ibs", creates the "Structure Box" on the page.
<StructureSection load='3ibs' size='340' side='right'caption='[[3ibs]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ibs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IBS FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3ibs|  PDB=3ibs  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ibs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ibs OCA], [https://pdbe.org/3ibs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ibs RCSB], [https://www.ebi.ac.uk/pdbsum/3ibs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ibs ProSAT]</span></td></tr>
 
</table>
===Crystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicron===
== Function ==
 
[https://www.uniprot.org/uniprot/Q8A9A9_BACTN Q8A9A9_BACTN]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3IBS is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IBS OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/3ibs_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ibs ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bacteroides thetaiotaomicron]]
[[Category: Bacteroides thetaiotaomicron]]
[[Category: Bearden, J.]]
[[Category: Large Structures]]
[[Category: Borek, D.]]
[[Category: Bearden J]]
[[Category: Hattne, J.]]
[[Category: Borek D]]
[[Category: Joachimiak, A.]]
[[Category: Hattne J]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Joachimiak A]]
[[Category: Nakka, C.]]
[[Category: Nakka C]]
[[Category: Otwinowski, Z.]]
[[Category: Otwinowski Z]]
[[Category: Sather, A.]]
[[Category: Sather A]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 21 17:10:50 2009''

Latest revision as of 09:19, 27 November 2024

Crystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicronCrystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicron

Structural highlights

3ibs is a 2 chain structure with sequence from Bacteroides thetaiotaomicron. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q8A9A9_BACTN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3ibs, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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