3f6w: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:3f6w.png|left|200px]]
-<!--
+==XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000==
-The line below this paragraph, containing "STRUCTURE_3f6w", creates the "Structure Box" on the page.
+<StructureSection load='3f6w' size='340' side='right'caption='[[3f6w]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3f6w]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F6W FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3f6w|  PDB=3f6w  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f6w OCA], [https://pdbe.org/3f6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f6w RCSB], [https://www.ebi.ac.uk/pdbsum/3f6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f6w ProSAT], [https://www.topsan.org/Proteins/MCSG/3f6w TOPSAN]</span></td></tr>
+</table>
-===XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000===
+== Function ==
+[https://www.uniprot.org/uniprot/Q889N2_PSESM Q889N2_PSESM]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-F6W is a 5 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._dc3000 Pseudomonas syringae pv. tomato str. dc3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6W OCA].
+Check<jmol>
-[[Category: Pseudomonas syringae pv. tomato str. dc3000]]
+  <jmolCheckbox>
-[[Category: Cuff, M.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f6/3f6w_consurf.spt"</scriptWhenChecked>
-[[Category: Gu, M.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Joachimiack, A.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+  </jmolCheckbox>
-[[Category: Petrova, T.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f6w ConSurf].
-[[Category: Shackleford, G.]]
+<div style="clear:both"></div>
-[[Category: Dna binding protein]]
+__TOC__
-[[Category: Dna-binding]]
+</StructureSection>
-[[Category: Helix-turn-helix]]
+[[Category: Large Structures]]
-[[Category: Mcsg]]
+[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
-[[Category: Midwest center for structural genomic]]
+[[Category: Cuff M]]
-[[Category: Protein structure initiative]]
+[[Category: Gu M]]
-[[Category: Psi-2]]
+[[Category: Joachimiak A]]
-[[Category: Structural genomic]]
+[[Category: Petrova T]]
-[[Category: Xenobiotic response element family of transcriptional regulator]]
+[[Category: Shackleford G]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 19 20:12:49 2009''