3h5o: Difference between revisions

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-{{Seed}}
-[[Image:3h5o.png|left|200px]]
-<!--
+==The crystal structure of transcription regulator GntR from Chromobacterium violaceum==
-The line below this paragraph, containing "STRUCTURE_3h5o", creates the "Structure Box" on the page.
+<StructureSection load='3h5o' size='340' side='right'caption='[[3h5o]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H5O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H5O FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3h5o|  PDB=3h5o  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h5o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h5o OCA], [https://pdbe.org/3h5o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h5o RCSB], [https://www.ebi.ac.uk/pdbsum/3h5o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h5o ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3h5o TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h5/3h5o_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h5o ConSurf].
+<div style="clear:both"></div>
-===The crystal structure of transcription regulator GntR from Chromobacterium violaceum===
+==See Also==
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-H5O is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H5O OCA].
+[[Category: Large Structures]]
-[[Category: Chromobacterium violaceum]]
+[[Category: Burley SK]]
-[[Category: Burley, S K.]]
+[[Category: Swaminathan S]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Zhang Z]]
-[[Category: Swaminathan, S.]]
-[[Category: Zhang, Z.]]
-[[Category: 11234b]]
-[[Category: Chromobacterium violaceum]]
-[[Category: Dna-binding]]
-[[Category: Gntr]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Sgx]]
-[[Category: Structural genomic]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]
-[[Category: Transcription regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun  3 08:45:23 2009''