1vbl: Difference between revisions

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New page: left|200px<br /><applet load="1vbl" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vbl, resolution 1.91Å" /> '''Structure of the the...
 
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[[Image:1vbl.gif|left|200px]]<br /><applet load="1vbl" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vbl, resolution 1.91&Aring;" />
'''Structure of the thermostable pectate lyase PL 47'''<br />


==About this Structure==
==Structure of the thermostable pectate lyase PL 47==
1VBL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_sp._ts-47 Bacillus sp. ts-47] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VBL OCA].  
<StructureSection load='1vbl' size='340' side='right'caption='[[1vbl]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
[[Category: Bacillus sp. ts-47]]
== Structural highlights ==
[[Category: Pectate lyase]]
<table><tr><td colspan='2'>[[1vbl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._TS-47 Bacillus sp. TS-47]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VBL FirstGlance]. <br>
[[Category: Single protein]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
[[Category: Kitatani, T.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
[[Category: Nakaniwa, T.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vbl OCA], [https://pdbe.org/1vbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vbl RCSB], [https://www.ebi.ac.uk/pdbsum/1vbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vbl ProSAT]</span></td></tr>
[[Category: Nishimura, K.]]
</table>
[[Category: Sakai, T.]]
== Function ==
[[Category: Tada, T.]]
[https://www.uniprot.org/uniprot/Q9AJM4_9BACI Q9AJM4_9BACI]  
[[Category: Takao, M.]]
== Evolutionary Conservation ==
[[Category: Yamaguchi, A.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: CA]]
Check<jmol>
[[Category: bacillus subtilis]]
  <jmolCheckbox>
[[Category: calcium ion]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vbl_consurf.spt"</scriptWhenChecked>
[[Category: pectate lyase]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: pectin]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: pl 47]]
  </jmolCheckbox>
[[Category: thermostable]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vbl ConSurf].
 
<div style="clear:both"></div>
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:02:39 2007''
__TOC__
</StructureSection>
[[Category: Bacillus sp. TS-47]]
[[Category: Large Structures]]
[[Category: Kitatani T]]
[[Category: Nakaniwa T]]
[[Category: Nishimura K]]
[[Category: Sakai T]]
[[Category: Tada T]]
[[Category: Takao M]]
[[Category: Yamaguchi A]]

Latest revision as of 03:01, 28 December 2023

Structure of the thermostable pectate lyase PL 47Structure of the thermostable pectate lyase PL 47

Structural highlights

1vbl is a 1 chain structure with sequence from Bacillus sp. TS-47. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.91Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9AJM4_9BACI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1vbl, resolution 1.91Å

Drag the structure with the mouse to rotate

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