3dxx: Difference between revisions

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{{Seed}}
[[Image:3dxx.jpg|left|200px]]


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==Crystal structure of EcTrmB==
The line below this paragraph, containing "STRUCTURE_3dxx", creates the "Structure Box" on the page.
<StructureSection load='3dxx' size='340' side='right'caption='[[3dxx]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dxx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_3dxx| PDB=3dxx |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxx OCA], [https://pdbe.org/3dxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxx RCSB], [https://www.ebi.ac.uk/pdbsum/3dxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxx ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TRMB_ECOLI TRMB_ECOLI] Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxx_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxx ConSurf].
<div style="clear:both"></div>


===Crystal structure of EcTrmB===
==See Also==
 
*[[Actin-related protein 3D structures|Actin-related protein 3D structures]]
 
*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
==About this Structure==
__TOC__
3DXX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXX OCA].
</StructureSection>
 
[[Category: Escherichia coli K-12]]
==Reference==
[[Category: Large Structures]]
<ref group="xtra">PMID:19373903</ref><references group="xtra"/>
[[Category: Gao YX]]
[[Category: Escherichia coli k12]]
[[Category: Liu Q]]
[[Category: Gao, Y X.]]
[[Category: Niu LW]]
[[Category: Liu, Q.]]
[[Category: Teng MK]]
[[Category: Niu, L W.]]
[[Category: Zhou HH]]
[[Category: Teng, M K.]]
[[Category: Zhou, H H.]]
[[Category: Methyltransferase]]
[[Category: Rossmann fold methyltransferase]]
[[Category: S-adenosyl-l-methionine]]
[[Category: Transferase]]
[[Category: Trna modification]]
[[Category: Trna processing]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 20 17:21:16 2009''

Latest revision as of 11:24, 20 March 2024

Crystal structure of EcTrmBCrystal structure of EcTrmB

Structural highlights

3dxx is a 1 chain structure with sequence from Escherichia coli K-12. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.05Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TRMB_ECOLI Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3dxx, resolution 2.05Å

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