User:Michael Strong/H1N1/NP: Difference between revisions

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New page: <pre> >gb|ABA27433.1| nucleoprotein [Influenza A virus (A/swine/MI/PU243/04 (H3N1))] gb|ABF17978.1| nucleoprotein [Influenza A virus (A/Ontario/RV1273/2005(H3N2))] gb|ABF17979.1| nucl...
 
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[[User:Michael_Strong|home]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1|H1N1]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/PB2|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1|PB1]]<font color="blue">•</font>  [[User:Michael_Strong/H1N1/PA|PA]]  <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA|HA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NP|NP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NA|NA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/MP|MP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NS|NS]]
== Protein Structural Homolgy Model  ==
<applet load='MSNP1.pdb' size='300' frame='true' align='center' caption='NP Homology Model, Mexico Strain, [http://www.ncbi.nlm.nih.gov/nuccore/FJ998217 A/Mexico/InDRE4487/2009 NP], residues 28-502, 94% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2q06 2q06]' scene ='User:Michael_Strong/H1N1/NP/MSA/1/1'/>
== Sequence Polymorphisms ==
{| class="wikitable"
|Protein
|Polymorphism
|Strain with Polymorphism
|Number of Strains with Polymorphism
|----
|NP
|G22D
|gi|229598884_A/Texas/15/2009
|1
|----
|NP
|V35A
|gi|237624329_A/swine/Alberta/O
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/35/1'>35</scene>
|----
|NP
|S90N
|gi|229536012_A/Arizona/01/2009
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/90/1'>90</scene>
|----
|NP
|V106I
|gi|229892748_A/Canada-ON/RV152
|28
|<scene name='User:Michael_Strong/H1N1/NP/MSA/106/1'>106</scene>
|----
|NP
|Q128L
|gi|227977162_A/California/07/2
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/128/1'>128</scene>
|----
|NP
|L139I
|gi|229783384_A/New_York/1669/2
|2
|<scene name='User:Michael_Strong/H1N1/NP/MSA/139/1'>139</scene>
|----
|NP
|E198K
|gi|237624329_A/swine/Alberta/O
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/198/1'>198</scene>
|----
|NP
|N208D
|gi|237624329_A/swine/Alberta/O
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/208/1'>208</scene>
|----
|NP
|V223I
|gi|229536102_A/Nebraska/02/200
|2
|<scene name='User:Michael_Strong/H1N1/NP/MSA/223/1'>223</scene>
|----
|NP
|M228T
|gi|237624329_A/swine/Alberta/O
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/228/1'>228</scene>
|----
|NP
|A257T
|gi|229396492_A/Ohio/07/2009
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/257/1'>257</scene>
|----
|NP
|V349I
|gi|229536131_A/Colorado/03/200
|2
|<scene name='User:Michael_Strong/H1N1/NP/MSA/349/1'>349</scene>
|----
|NP
|V358M
|gi|229598873_A/Ohio/07/2009
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/358/1'>358</scene>
|----
|NP
|V369I
|gi|229536077_A/Indiana/09/2009
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/369/1'>369</scene>
|----
|NP
|T379I
|gi|229536102_A/Nebraska/02/200
|18
|<scene name='User:Michael_Strong/H1N1/NP/MSA/379/1'>379</scene>
|----
|NP
|T379V
|gi|229892752_A/Canada-NS/RV153
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/379/1'>379</scene>
|----
|NP
|D381N
|gi|229396423_A/California/08/2
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/381/1'>381</scene>
|----
|NP
|D381Y
|gi|237624329_A/swine/Alberta/O
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/381/1'>381</scene>
|----
|NP
|T402A
|gi|237511901_A/Mexico/4516/200
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/402/1'>402</scene>
|----
|NP
|S456N
|gi|229536077_A/Indiana/09/2009
|1
|<scene name='User:Michael_Strong/H1N1/NP/MSA/456/1'>456</scene>
|----
|}
<scene name='User:Michael_Strong/H1N1/NP/MSA/All/1'>All Polymorphisms</scene>
== Multiple Sequence Alignment ==
H1N1 Swine Flu Multiple Sequence Alignment of NP Protein, 67 sequences
<pre>
gi|229536005_A/Kansas/03/2009      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783384_A/New_York/1669/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536077_A/Indiana/09/2009      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831778_A/California/06/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831761_A/California/05/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462701_A/Valencia/GP4/20      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462713_A/Pais_Vasco/GP20      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462689_A/Castilla-La_Man      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536066_A/Texas/07/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536024_A/Minnesota/02/20      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536038_A/Arizona/02/2009      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783405_A/New_York/1682/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511891_A/Mexico/4486/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511915_A/Mexico/4108/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227977162_A/California/07/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536012_A/Arizona/01/2009      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229598884_A/Texas/15/2009        ------MASQGTKRSYEQMETDGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229299508_A/Texas/05/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831792_A/Texas/05/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229299528_A/Texas/04/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831819_A/Texas/04/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227977106_A/California/04/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227809832_A/California/04/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396465_A/Texas/06/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462725_A/Castilla-La_Man      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535799_A/Texas/09/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535951_A/Texas/08/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535999_A/Kansas/02/2009      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511917_A/Mexico/4115/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536057_A/New_York/20/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396355_A/New_York/12/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536051_A/New_York/20/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396481_A/New_York/19/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511911_A/Mexico/4482/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511913_A/Mexico/4603/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511895_A/Mexico/4604/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783369_A/Korea/01/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535818_A/California/14/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535905_A/Massachusetts/0      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536096_A/Massachusetts/0      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536109_A/Michigan/02/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536123_A/New_York/13/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535786_A/New_York/22/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396367_A/New_York/06/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396437_A/New_York/10/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396377_A/New_York/11/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396453_A/New_York/15/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396393_A/New_York/18/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396417_A/New_York/23/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396406_A/New_York/31/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229598873_A/Ohio/07/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396492_A/Ohio/07/2009        ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511901_A/Mexico/4516/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892750_A/Canada-AB/RV153      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892746_A/Canada-ON/RV152      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892748_A/Canada-ON/RV152      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484052_A/Canada-ON/RV152      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892744_A/Mexico/InDRE411      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484050_A/Mexico/InDRE448      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229396423_A/California/08/2      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535987_A/South_Carolina/      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536131_A/Colorado/03/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892752_A/Canada-NS/RV153      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229536102_A/Nebraska/02/200      ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892742_A/Canada-NS/RV153      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484048_A/Canada-NS/RV153      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|237624329_A/swine/Alberta/O      MSDIEAMASQGTKRSYEQMETGGERQDATEIRASAGRMIGGIGRFYIQMC 50
                                          ***************.************.***************
gi|229536005_A/Kansas/03/2009      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783384_A/New_York/1669/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536077_A/Indiana/09/2009      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831778_A/California/06/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831761_A/California/05/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462701_A/Valencia/GP4/20      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462713_A/Pais_Vasco/GP20      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462689_A/Castilla-La_Man      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536066_A/Texas/07/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536024_A/Minnesota/02/20      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536038_A/Arizona/02/2009      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783405_A/New_York/1682/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511891_A/Mexico/4486/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511915_A/Mexico/4108/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227977162_A/California/07/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536012_A/Arizona/01/2009      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPNAGKDPKKTGG 94
gi|229598884_A/Texas/15/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229299508_A/Texas/05/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831792_A/Texas/05/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229299528_A/Texas/04/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831819_A/Texas/04/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227977106_A/California/04/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227809832_A/California/04/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396465_A/Texas/06/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462725_A/Castilla-La_Man      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535799_A/Texas/09/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535951_A/Texas/08/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535999_A/Kansas/02/2009      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511917_A/Mexico/4115/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536057_A/New_York/20/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396355_A/New_York/12/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536051_A/New_York/20/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396481_A/New_York/19/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511911_A/Mexico/4482/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511913_A/Mexico/4603/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511895_A/Mexico/4604/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783369_A/Korea/01/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535818_A/California/14/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535905_A/Massachusetts/0      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536096_A/Massachusetts/0      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536109_A/Michigan/02/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536123_A/New_York/13/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535786_A/New_York/22/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396367_A/New_York/06/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396437_A/New_York/10/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396377_A/New_York/11/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396453_A/New_York/15/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396393_A/New_York/18/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396417_A/New_York/23/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396406_A/New_York/31/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229598873_A/Ohio/07/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396492_A/Ohio/07/2009        TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511901_A/Mexico/4516/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892750_A/Canada-AB/RV153      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892746_A/Canada-ON/RV152      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892748_A/Canada-ON/RV152      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484052_A/Canada-ON/RV152      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892744_A/Mexico/InDRE411      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484050_A/Mexico/InDRE448      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229396423_A/California/08/2      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535987_A/South_Carolina/      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536131_A/Colorado/03/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892752_A/Canada-NS/RV153      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229536102_A/Nebraska/02/200      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892742_A/Canada-NS/RV153      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484048_A/Canada-NS/RV153      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|237624329_A/swine/Alberta/O      TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
                                    ***************************************.**********
gi|229536005_A/Kansas/03/2009      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144
gi|229783384_A/New_York/1669/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144
gi|229536077_A/Indiana/09/2009      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831778_A/California/06/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831761_A/California/05/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462701_A/Valencia/GP4/20      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462713_A/Pais_Vasco/GP20      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462689_A/Castilla-La_Man      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536066_A/Texas/07/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536024_A/Minnesota/02/20      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536038_A/Arizona/02/2009      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229783405_A/New_York/1682/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511891_A/Mexico/4486/200      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511915_A/Mexico/4108/200      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227977162_A/California/07/2      PIYRRVDGKWMRELILYDKXEIRRVWRLANNGEDATAGLTHIMIWHSNLN 144
gi|229536012_A/Arizona/01/2009      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229598884_A/Texas/15/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229299508_A/Texas/05/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831792_A/Texas/05/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229299528_A/Texas/04/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831819_A/Texas/04/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227977106_A/California/04/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227809832_A/California/04/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396465_A/Texas/06/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462725_A/Castilla-La_Man      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535799_A/Texas/09/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535951_A/Texas/08/2009        PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535999_A/Kansas/02/2009      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511917_A/Mexico/4115/200      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536057_A/New_York/20/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396355_A/New_York/12/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536051_A/New_York/20/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396481_A/New_York/19/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511911_A/Mexico/4482/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511913_A/Mexico/4603/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511895_A/Mexico/4604/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229783369_A/Korea/01/2009        PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535818_A/California/14/2      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535905_A/Massachusetts/0      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536096_A/Massachusetts/0      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536109_A/Michigan/02/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536123_A/New_York/13/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535786_A/New_York/22/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396367_A/New_York/06/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396437_A/New_York/10/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396377_A/New_York/11/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396453_A/New_York/15/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396393_A/New_York/18/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396417_A/New_York/23/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396406_A/New_York/31/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229598873_A/Ohio/07/2009        PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396492_A/Ohio/07/2009        PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511901_A/Mexico/4516/200      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892750_A/Canada-AB/RV153      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892746_A/Canada-ON/RV152      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892748_A/Canada-ON/RV152      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484052_A/Canada-ON/RV152      PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892744_A/Mexico/InDRE411      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484050_A/Mexico/InDRE448      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229396423_A/California/08/2      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535987_A/South_Carolina/      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536131_A/Colorado/03/200      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892752_A/Canada-NS/RV153      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229536102_A/Nebraska/02/200      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892742_A/Canada-NS/RV153      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484048_A/Canada-NS/RV153      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|237624329_A/swine/Alberta/O      PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
                                    *****:************* ******* **********:***********
gi|229536005_A/Kansas/03/2009      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783384_A/New_York/1669/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536077_A/Indiana/09/2009      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831778_A/California/06/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831761_A/California/05/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462701_A/Valencia/GP4/20      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462713_A/Pais_Vasco/GP20      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462689_A/Castilla-La_Man      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536066_A/Texas/07/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536024_A/Minnesota/02/20      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536038_A/Arizona/02/2009      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783405_A/New_York/1682/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511891_A/Mexico/4486/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511915_A/Mexico/4108/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227977162_A/California/07/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536012_A/Arizona/01/2009      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229598884_A/Texas/15/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229299508_A/Texas/05/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831792_A/Texas/05/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229299528_A/Texas/04/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831819_A/Texas/04/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227977106_A/California/04/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227809832_A/California/04/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396465_A/Texas/06/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462725_A/Castilla-La_Man      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535799_A/Texas/09/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535951_A/Texas/08/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535999_A/Kansas/02/2009      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511917_A/Mexico/4115/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536057_A/New_York/20/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396355_A/New_York/12/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536051_A/New_York/20/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396481_A/New_York/19/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511911_A/Mexico/4482/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511913_A/Mexico/4603/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511895_A/Mexico/4604/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783369_A/Korea/01/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535818_A/California/14/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535905_A/Massachusetts/0      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536096_A/Massachusetts/0      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536109_A/Michigan/02/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536123_A/New_York/13/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535786_A/New_York/22/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396367_A/New_York/06/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396437_A/New_York/10/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396377_A/New_York/11/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396453_A/New_York/15/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396393_A/New_York/18/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396417_A/New_York/23/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396406_A/New_York/31/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229598873_A/Ohio/07/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396492_A/Ohio/07/2009        DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511901_A/Mexico/4516/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892750_A/Canada-AB/RV153      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892746_A/Canada-ON/RV152      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892748_A/Canada-ON/RV152      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484052_A/Canada-ON/RV152      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892744_A/Mexico/InDRE411      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484050_A/Mexico/InDRE448      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229396423_A/California/08/2      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535987_A/South_Carolina/      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536131_A/Colorado/03/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892752_A/Canada-NS/RV153      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229536102_A/Nebraska/02/200      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892742_A/Canada-NS/RV153      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484048_A/Canada-NS/RV153      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|237624329_A/swine/Alberta/O      DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMKLI 200
                                    ***********************************************:**
gi|229536005_A/Kansas/03/2009      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783384_A/New_York/1669/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536077_A/Indiana/09/2009      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831778_A/California/06/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831761_A/California/05/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462701_A/Valencia/GP4/20      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462713_A/Pais_Vasco/GP20      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462689_A/Castilla-La_Man      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536066_A/Texas/07/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536024_A/Minnesota/02/20      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536038_A/Arizona/02/2009      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783405_A/New_York/1682/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511891_A/Mexico/4486/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511915_A/Mexico/4108/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227977162_A/California/07/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536012_A/Arizona/01/2009      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229598884_A/Texas/15/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229299508_A/Texas/05/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831792_A/Texas/05/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229299528_A/Texas/04/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831819_A/Texas/04/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227977106_A/California/04/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227809832_A/California/04/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396465_A/Texas/06/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462725_A/Castilla-La_Man      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535799_A/Texas/09/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535951_A/Texas/08/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535999_A/Kansas/02/2009      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511917_A/Mexico/4115/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536057_A/New_York/20/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396355_A/New_York/12/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536051_A/New_York/20/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396481_A/New_York/19/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511911_A/Mexico/4482/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511913_A/Mexico/4603/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511895_A/Mexico/4604/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783369_A/Korea/01/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535818_A/California/14/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535905_A/Massachusetts/0      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536096_A/Massachusetts/0      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536109_A/Michigan/02/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536123_A/New_York/13/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535786_A/New_York/22/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396367_A/New_York/06/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396437_A/New_York/10/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396377_A/New_York/11/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396453_A/New_York/15/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396393_A/New_York/18/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396417_A/New_York/23/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396406_A/New_York/31/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229598873_A/Ohio/07/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396492_A/Ohio/07/2009        RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511901_A/Mexico/4516/200      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892750_A/Canada-AB/RV153      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892746_A/Canada-ON/RV152      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892748_A/Canada-ON/RV152      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484052_A/Canada-ON/RV152      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892744_A/Mexico/InDRE411      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484050_A/Mexico/InDRE448      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229396423_A/California/08/2      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535987_A/South_Carolina/      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536131_A/Colorado/03/200      RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892752_A/Canada-NS/RV153      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229536102_A/Nebraska/02/200      RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892742_A/Canada-NS/RV153      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484048_A/Canada-NS/RV153      RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|237624329_A/swine/Alberta/O      RMIKRGIDDRNFWRGENGRRTRVAYERTCNILKGKFQTAAQRAMMDQVRE 250
                                    *******:**************:**** **********************
gi|229536005_A/Kansas/03/2009      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783384_A/New_York/1669/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536077_A/Indiana/09/2009      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831778_A/California/06/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831761_A/California/05/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462701_A/Valencia/GP4/20      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462713_A/Pais_Vasco/GP20      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462689_A/Castilla-La_Man      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536066_A/Texas/07/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536024_A/Minnesota/02/20      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536038_A/Arizona/02/2009      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783405_A/New_York/1682/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511891_A/Mexico/4486/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511915_A/Mexico/4108/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227977162_A/California/07/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536012_A/Arizona/01/2009      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229598884_A/Texas/15/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229299508_A/Texas/05/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831792_A/Texas/05/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229299528_A/Texas/04/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831819_A/Texas/04/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227977106_A/California/04/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227809832_A/California/04/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396465_A/Texas/06/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462725_A/Castilla-La_Man      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535799_A/Texas/09/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535951_A/Texas/08/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535999_A/Kansas/02/2009      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511917_A/Mexico/4115/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536057_A/New_York/20/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396355_A/New_York/12/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536051_A/New_York/20/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396481_A/New_York/19/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511911_A/Mexico/4482/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511913_A/Mexico/4603/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511895_A/Mexico/4604/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783369_A/Korea/01/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535818_A/California/14/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535905_A/Massachusetts/0      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536096_A/Massachusetts/0      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536109_A/Michigan/02/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536123_A/New_York/13/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535786_A/New_York/22/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396367_A/New_York/06/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396437_A/New_York/10/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396377_A/New_York/11/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396453_A/New_York/15/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396393_A/New_York/18/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396417_A/New_York/23/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396406_A/New_York/31/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229598873_A/Ohio/07/2009        SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396492_A/Ohio/07/2009        SRNPGNTEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511901_A/Mexico/4516/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892750_A/Canada-AB/RV153      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892746_A/Canada-ON/RV152      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892748_A/Canada-ON/RV152      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484052_A/Canada-ON/RV152      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892744_A/Mexico/InDRE411      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484050_A/Mexico/InDRE448      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229396423_A/California/08/2      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535987_A/South_Carolina/      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536131_A/Colorado/03/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892752_A/Canada-NS/RV153      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229536102_A/Nebraska/02/200      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892742_A/Canada-NS/RV153      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484048_A/Canada-NS/RV153      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|237624329_A/swine/Alberta/O      SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
                                    ******:*******************************************
gi|229536005_A/Kansas/03/2009      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783384_A/New_York/1669/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536077_A/Indiana/09/2009      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831778_A/California/06/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831761_A/California/05/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462701_A/Valencia/GP4/20      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462713_A/Pais_Vasco/GP20      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462689_A/Castilla-La_Man      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536066_A/Texas/07/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536024_A/Minnesota/02/20      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536038_A/Arizona/02/2009      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783405_A/New_York/1682/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511891_A/Mexico/4486/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511915_A/Mexico/4108/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227977162_A/California/07/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536012_A/Arizona/01/2009      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229598884_A/Texas/15/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229299508_A/Texas/05/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831792_A/Texas/05/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229299528_A/Texas/04/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831819_A/Texas/04/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227977106_A/California/04/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227809832_A/California/04/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396465_A/Texas/06/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462725_A/Castilla-La_Man      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535799_A/Texas/09/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535951_A/Texas/08/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535999_A/Kansas/02/2009      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511917_A/Mexico/4115/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536057_A/New_York/20/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396355_A/New_York/12/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536051_A/New_York/20/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396481_A/New_York/19/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511911_A/Mexico/4482/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511913_A/Mexico/4603/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511895_A/Mexico/4604/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783369_A/Korea/01/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535818_A/California/14/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535905_A/Massachusetts/0      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536096_A/Massachusetts/0      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536109_A/Michigan/02/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536123_A/New_York/13/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535786_A/New_York/22/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396367_A/New_York/06/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396437_A/New_York/10/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396377_A/New_York/11/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396453_A/New_York/15/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396393_A/New_York/18/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396417_A/New_York/23/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396406_A/New_York/31/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229598873_A/Ohio/07/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396492_A/Ohio/07/2009        GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511901_A/Mexico/4516/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229892750_A/Canada-AB/RV153      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892746_A/Canada-ON/RV152      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892748_A/Canada-ON/RV152      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484052_A/Canada-ON/RV152      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892744_A/Mexico/InDRE411      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484050_A/Mexico/InDRE448      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229396423_A/California/08/2      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535987_A/South_Carolina/      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344
gi|229536131_A/Colorado/03/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344
gi|229892752_A/Canada-NS/RV153      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229536102_A/Nebraska/02/200      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229892742_A/Canada-NS/RV153      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484048_A/Canada-NS/RV153      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|237624329_A/swine/Alberta/O      GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
                                    ************************************************:*
gi|229536005_A/Kansas/03/2009      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229783384_A/New_York/1669/2      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536077_A/Indiana/09/2009      SFIRGKKVIPRGKLSTRGIQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227831778_A/California/06/2      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227831761_A/California/05/2      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462701_A/Valencia/GP4/20      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462713_A/Pais_Vasco/GP20      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462689_A/Castilla-La_Man      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536066_A/Texas/07/2009        SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536024_A/Minnesota/02/20      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536038_A/Arizona/02/2009      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229783405_A/New_York/1682/2      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|237511891_A/Mexico/4486/200      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|237511915_A/Mexico/4108/200      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227977162_A/California/07/2      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536012_A/Arizona/01/2009      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229598884_A/Texas/15/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229299508_A/Texas/05/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227831792_A/Texas/05/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229299528_A/Texas/04/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227831819_A/Texas/04/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227977106_A/California/04/2      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227809832_A/California/04/2      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396465_A/Texas/06/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229462725_A/Castilla-La_Man      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535799_A/Texas/09/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535951_A/Texas/08/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535999_A/Kansas/02/2009      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511917_A/Mexico/4115/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536057_A/New_York/20/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396355_A/New_York/12/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536051_A/New_York/20/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396481_A/New_York/19/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511911_A/Mexico/4482/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511913_A/Mexico/4603/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511895_A/Mexico/4604/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229783369_A/Korea/01/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535818_A/California/14/2      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535905_A/Massachusetts/0      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536096_A/Massachusetts/0      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536109_A/Michigan/02/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536123_A/New_York/13/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535786_A/New_York/22/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396367_A/New_York/06/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396437_A/New_York/10/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396377_A/New_York/11/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396453_A/New_York/15/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396393_A/New_York/18/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396417_A/New_York/23/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396406_A/New_York/31/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229598873_A/Ohio/07/2009        SFIRGKKMIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396492_A/Ohio/07/2009        SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511901_A/Mexico/4516/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229892750_A/Canada-AB/RV153      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892746_A/Canada-ON/RV152      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892748_A/Canada-ON/RV152      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229484052_A/Canada-ON/RV152      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892744_A/Mexico/InDRE411      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229484050_A/Mexico/InDRE448      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229396423_A/California/08/2      SFIRGKKVIPRGKLSTRGVQIASNENVETMNSNTLELRSRYWAIRTRSGG 394
gi|229535987_A/South_Carolina/      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536131_A/Colorado/03/200      SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229892752_A/Canada-NS/RV153      SFIRGKKVIPRGKLSTRGVQIASNENVEVMDSNTLELRSRYWAIRTRSGG 400
gi|229536102_A/Nebraska/02/200      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229892742_A/Canada-NS/RV153      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400
gi|229484048_A/Canada-NS/RV153      SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400
gi|237624329_A/swine/Alberta/O      SFIRGKKVIPRGKLSTRGVQIASNENVEIMYSNTLELRSRYWAIRTRSGG 400
                                    *******:**********:********* * *******************
gi|229536005_A/Kansas/03/2009      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783384_A/New_York/1669/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536077_A/Indiana/09/2009      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831778_A/California/06/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831761_A/California/05/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462701_A/Valencia/GP4/20      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462713_A/Pais_Vasco/GP20      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462689_A/Castilla-La_Man      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536066_A/Texas/07/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536024_A/Minnesota/02/20      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536038_A/Arizona/02/2009      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783405_A/New_York/1682/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511891_A/Mexico/4486/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511915_A/Mexico/4108/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227977162_A/California/07/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536012_A/Arizona/01/2009      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229598884_A/Texas/15/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229299508_A/Texas/05/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831792_A/Texas/05/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229299528_A/Texas/04/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831819_A/Texas/04/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227977106_A/California/04/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227809832_A/California/04/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396465_A/Texas/06/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462725_A/Castilla-La_Man      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535799_A/Texas/09/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535951_A/Texas/08/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535999_A/Kansas/02/2009      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511917_A/Mexico/4115/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536057_A/New_York/20/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396355_A/New_York/12/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536051_A/New_York/20/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396481_A/New_York/19/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511911_A/Mexico/4482/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511913_A/Mexico/4603/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511895_A/Mexico/4604/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783369_A/Korea/01/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535818_A/California/14/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535905_A/Massachusetts/0      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536096_A/Massachusetts/0      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536109_A/Michigan/02/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536123_A/New_York/13/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535786_A/New_York/22/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396367_A/New_York/06/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396437_A/New_York/10/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396377_A/New_York/11/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396453_A/New_York/15/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396393_A/New_York/18/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396417_A/New_York/23/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396406_A/New_York/31/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229598873_A/Ohio/07/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396492_A/Ohio/07/2009        NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511901_A/Mexico/4516/200      NANQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892750_A/Canada-AB/RV153      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892746_A/Canada-ON/RV152      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892748_A/Canada-ON/RV152      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484052_A/Canada-ON/RV152      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892744_A/Mexico/InDRE411      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484050_A/Mexico/InDRE448      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229396423_A/California/08/2      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535987_A/South_Carolina/      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536131_A/Colorado/03/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892752_A/Canada-NS/RV153      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229536102_A/Nebraska/02/200      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892742_A/Canada-NS/RV153      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484048_A/Canada-NS/RV153      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|237624329_A/swine/Alberta/O      NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
                                    *:************************************************
gi|229536005_A/Kansas/03/2009      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783384_A/New_York/1669/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536077_A/Indiana/09/2009      IRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831778_A/California/06/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831761_A/California/05/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462701_A/Valencia/GP4/20      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462713_A/Pais_Vasco/GP20      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462689_A/Castilla-La_Man      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536066_A/Texas/07/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536024_A/Minnesota/02/20      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536038_A/Arizona/02/2009      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783405_A/New_York/1682/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511891_A/Mexico/4486/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511915_A/Mexico/4108/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227977162_A/California/07/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536012_A/Arizona/01/2009      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229598884_A/Texas/15/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229299508_A/Texas/05/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831792_A/Texas/05/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229299528_A/Texas/04/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831819_A/Texas/04/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227977106_A/California/04/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227809832_A/California/04/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396465_A/Texas/06/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462725_A/Castilla-La_Man      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535799_A/Texas/09/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535951_A/Texas/08/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535999_A/Kansas/02/2009      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511917_A/Mexico/4115/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536057_A/New_York/20/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396355_A/New_York/12/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536051_A/New_York/20/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396481_A/New_York/19/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511911_A/Mexico/4482/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511913_A/Mexico/4603/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511895_A/Mexico/4604/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783369_A/Korea/01/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535818_A/California/14/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535905_A/Massachusetts/0      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536096_A/Massachusetts/0      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536109_A/Michigan/02/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536123_A/New_York/13/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535786_A/New_York/22/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396367_A/New_York/06/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396437_A/New_York/10/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396377_A/New_York/11/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396453_A/New_York/15/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396393_A/New_York/18/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396417_A/New_York/23/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396406_A/New_York/31/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229598873_A/Ohio/07/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396492_A/Ohio/07/2009        IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511901_A/Mexico/4516/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892750_A/Canada-AB/RV153      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892746_A/Canada-ON/RV152      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892748_A/Canada-ON/RV152      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484052_A/Canada-ON/RV152      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892744_A/Mexico/InDRE411      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484050_A/Mexico/InDRE448      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229396423_A/California/08/2      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535987_A/South_Carolina/      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536131_A/Colorado/03/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892752_A/Canada-NS/RV153      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229536102_A/Nebraska/02/200      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892742_A/Canada-NS/RV153      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484048_A/Canada-NS/RV153      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|237624329_A/swine/Alberta/O      IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
                                    *****.********************************************
gi|229536005_A/Kansas/03/2009      EYDS 498
gi|229783384_A/New_York/1669/2      EYDS 498
gi|229536077_A/Indiana/09/2009      EYDS 498
gi|227831778_A/California/06/2      EYDS 498
gi|227831761_A/California/05/2      EYDS 498
gi|229462701_A/Valencia/GP4/20      EYDS 498
gi|229462713_A/Pais_Vasco/GP20      EYDS 498
gi|229462689_A/Castilla-La_Man      EYDS 498
gi|229536066_A/Texas/07/2009        EYDS 498
gi|229536024_A/Minnesota/02/20      EYDS 498
gi|229536038_A/Arizona/02/2009      EYDS 498
gi|229783405_A/New_York/1682/2      EYDS 498
gi|237511891_A/Mexico/4486/200      EYDS 498
gi|237511915_A/Mexico/4108/200      EYDS 498
gi|227977162_A/California/07/2      EYDS 498
gi|229536012_A/Arizona/01/2009      EYDS 498
gi|229598884_A/Texas/15/2009        EYDS 498
gi|229299508_A/Texas/05/2009        EYDS 498
gi|227831792_A/Texas/05/2009        EYDS 498
gi|229299528_A/Texas/04/2009        EYDS 498
gi|227831819_A/Texas/04/2009        EYDS 498
gi|227977106_A/California/04/2      EYDS 498
gi|227809832_A/California/04/2      EYDS 498
gi|229396465_A/Texas/06/2009        EYDS 498
gi|229462725_A/Castilla-La_Man      EYDS 498
gi|229535799_A/Texas/09/2009        EYDS 498
gi|229535951_A/Texas/08/2009        EYDS 498
gi|229535999_A/Kansas/02/2009      EYDS 498
gi|237511917_A/Mexico/4115/200      EYDS 498
gi|229536057_A/New_York/20/200      EYDS 498
gi|229396355_A/New_York/12/200      EY-- 496
gi|229536051_A/New_York/20/200      EYDS 498
gi|229396481_A/New_York/19/200      EYDS 498
gi|237511911_A/Mexico/4482/200      EYDS 498
gi|237511913_A/Mexico/4603/200      EYDS 498
gi|237511895_A/Mexico/4604/200      EYDS 498
gi|229783369_A/Korea/01/2009        EYDS 498
gi|229535818_A/California/14/2      EYDS 498
gi|229535905_A/Massachusetts/0      EYDS 498
gi|229536096_A/Massachusetts/0      EYDS 498
gi|229536109_A/Michigan/02/200      EYDS 498
gi|229536123_A/New_York/13/200      EYDS 498
gi|229535786_A/New_York/22/200      EYDS 498
gi|229396367_A/New_York/06/200      EYDS 498
gi|229396437_A/New_York/10/200      EYDS 498
gi|229396377_A/New_York/11/200      EYDS 498
gi|229396453_A/New_York/15/200      EYDS 498
gi|229396393_A/New_York/18/200      EYDS 498
gi|229396417_A/New_York/23/200      EYDS 498
gi|229396406_A/New_York/31/200      EYDS 498
gi|229598873_A/Ohio/07/2009        EYDS 498
gi|229396492_A/Ohio/07/2009        EYDS 498
gi|237511901_A/Mexico/4516/200      EYDS 498
gi|229892750_A/Canada-AB/RV153      EYDS 504
gi|229892746_A/Canada-ON/RV152      EYDS 504
gi|229892748_A/Canada-ON/RV152      EYDS 504
gi|229484052_A/Canada-ON/RV152      EYDS 504
gi|229892744_A/Mexico/InDRE411      EYDS 504
gi|229484050_A/Mexico/InDRE448      EYDS 504
gi|229396423_A/California/08/2      EYDS 498
gi|229535987_A/South_Carolina/      EYDS 498
gi|229536131_A/Colorado/03/200      EYDS 498
gi|229892752_A/Canada-NS/RV153      EYDS 504
gi|229536102_A/Nebraska/02/200      EYDS 498
gi|229892742_A/Canada-NS/RV153      EYDS 504
gi|229484048_A/Canada-NS/RV153      EYDS 504
gi|237624329_A/swine/Alberta/O      EYDS 504
                                    ** 
</pre>
== BLAST ==
<pre>
<pre>
>gb|ABA27433.1|  nucleoprotein [Influenza A virus (A/swine/MI/PU243/04 (H3N1))]
>gb|ABA27433.1|  nucleoprotein [Influenza A virus (A/swine/MI/PU243/04 (H3N1))]
Line 93: Line 996:
             IVPSFDMSNEGSYFFGDNAEEYDS
             IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
>gb|ACQ63215.1|  nucleocapsid protein [Influenza A virus (A/New York/06/2009(H1N1))]
gb|ACQ63221.1|  nucleocapsid protein [Influenza A virus (A/New York/11/2009(H1N1))]
gb|ACQ63230.1|  nucleocapsid protein [Influenza A virus (A/New York/18/2009(H1N1))]
gb|ACQ63237.1|  nucleocapsid protein [Influenza A virus (A/New York/31/2009(H1N1))]
gb|ACQ63243.1|  nucleocapsid protein [Influenza A virus (A/New York/23/2009(H1N1))]
gb|ACQ63254.1|  nucleocapsid protein [Influenza A virus (A/New York/10/2009(H1N1))]
gb|ACQ63263.1|  nucleocapsid protein [Influenza A virus (A/New York/15/2009(H1N1))]
gb|ACQ63279.1|  nucleocapsid protein [Influenza A virus (A/New York/19/2009(H1N1))]
Length=498
Score = 1036 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/498 (99%), Positives = 498/498 (100%), Gaps = 0/498 (0%)
Query  7    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  66
            MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct  1    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  60
Query  67  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  126
            ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct  61  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW  120
Query  127  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  186
            RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct  121  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  180
Query  187  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  246
            AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct  181  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  240
Query  247  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  306
            QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct  241  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  300
Query  307  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  366
            IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct  301  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  360
Query  367  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  426
            RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct  361  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  420
Query  427  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  486
            ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct  421  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  480
Query  487  MSNEGSYFFGDNAEEYDS  504
            MSNEGSYFFGDNAEEYDS
Sbjct  481  MSNEGSYFFGDNAEEYDS  498




Line 187: Line 1,040:
             IVPSFDMSNEGSYFFGDNAEEYDS
             IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
>gb|ACQ63246.1|  nucleocapsid protein [Influenza A virus (A/California/08/2009(H1N1))]
Length=498
Score = 1036 bits (2679),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/498 (99%), Positives = 498/498 (100%), Gaps = 0/498 (0%)
Query  7    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  66
            MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct  1    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  60
Query  67  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  126
            ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct  61  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  120
Query  127  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  186
            RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct  121  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  180
Query  187  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  246
            AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct  181  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  240
Query  247  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  306
            QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct  241  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  300
Query  307  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  366
            IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct  301  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  360
Query  367  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  426
            RGVQIASNENVETM+SNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct  361  RGVQIASNENVETMNSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  420
Query  427  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  486
            ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct  421  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  480
Query  487  MSNEGSYFFGDNAEEYDS  504
            MSNEGSYFFGDNAEEYDS
Sbjct  481  MSNEGSYFFGDNAEEYDS  498




Line 273: Line 1,083:
             IVPSFDMSNEGSYFFGDNAEEYDS
             IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
>gb|ACP41927.1|  nucleocapsid protein [Influenza A virus (A/California/05/2009(H1N1))]
gb|ACP41936.1|  nucleocapsid protein [Influenza A virus (A/California/06/2009(H1N1))]
Length=498
Score = 1035 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/498 (99%), Positives = 497/498 (99%), Gaps = 0/498 (0%)
Query  7    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  66
            MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct  1    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  60
Query  67  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  126
            ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct  61  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  120
Query  127  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  186
            RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct  121  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  180
Query  187  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  246
            AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct  181  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  240
Query  247  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  306
            QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct  241  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  300
Query  307  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  366
            IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct  301  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  360
Query  367  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  426
            RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct  361  RGVQIASNENVEIMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  420
Query  427  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  486
            ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct  421  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  480
Query  487  MSNEGSYFFGDNAEEYDS  504
            MSNEGSYFFGDNAEEYDS
Sbjct  481  MSNEGSYFFGDNAEEYDS  498
>gb|ACQ63285.1|  nucleocapsid protein [Influenza A virus (A/Ohio/07/2009(H1N1))]
Length=498
Score = 1035 bits (2675),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/498 (99%), Positives = 497/498 (99%), Gaps = 0/498 (0%)
Query  7    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  66
            MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct  1    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  60
Query  67  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  126
            ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct  61  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW  120
Query  127  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  186
            RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct  121  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  180
Query  187  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  246
            AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct  181  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  240
Query  247  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  306
            QVRESRNPGN EIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct  241  QVRESRNPGNTEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  300
Query  307  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  366
            IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct  301  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  360
Query  367  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  426
            RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct  361  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  420
Query  427  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  486
            ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct  421  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  480
Query  487  MSNEGSYFFGDNAEEYDS  504
            MSNEGSYFFGDNAEEYDS
Sbjct  481  MSNEGSYFFGDNAEEYDS  498


>gb|AAL87892.1|AF455702_1  nucleoprotein [Influenza A virus (A/Swine/Minnesota/55551/00  
>gb|AAL87892.1|AF455702_1  nucleoprotein [Influenza A virus (A/Swine/Minnesota/55551/00  
Line 492: Line 1,214:
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504
Sbjct  481  IVPSFDMSNEGSYFFGDNAEEYDS  504


>gb|ACQ63208.1|  nucleocapsid protein [Influenza A virus (A/New York/12/2009(H1N1))]
Length=496
Score = 1033 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/496 (99%), Positives = 496/496 (100%), Gaps = 0/496 (0%)
Query  7    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  66
            MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct  1    MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS  60
Query  67  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW  126
            ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct  61  ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW  120
Query  127  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  186
            RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct  121  RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG  180
Query  187  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  246
            AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct  181  AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD  240
Query  247  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  306
            QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct  241  QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG  300
Query  307  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  366
            IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct  301  IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST  360
Query  367  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  426
            RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct  361  RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF  420
Query  427  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  486
            ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct  421  ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD  480
Query  487  MSNEGSYFFGDNAEEY  502
            MSNEGSYFFGDNAEEY
Sbjct  481  MSNEGSYFFGDNAEEY  496




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