1fxr: Difference between revisions

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-{{Seed}}
-[[Image:1fxr.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF THE FERREDOXIN I FROM DESULFOVIBRIO AFRICANUS AT 2.3 ANGSTROMS RESOLUTION==
-The line below this paragraph, containing "STRUCTURE_1fxr", creates the "Structure Box" on the page.
+<StructureSection load='1fxr' size='340' side='right'caption='[[1fxr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1fxr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfocurvibacter_africanus Desulfocurvibacter africanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FXR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1fxr|  PDB=1fxr  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fxr OCA], [https://pdbe.org/1fxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fxr RCSB], [https://www.ebi.ac.uk/pdbsum/1fxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fxr ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fx/1fxr_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fxr ConSurf].
+<div style="clear:both"></div>
-===CRYSTAL STRUCTURE OF THE FERREDOXIN I FROM DESULFOVIBRIO AFRICANUS AT 2.3 ANGSTROMS RESOLUTION===
+==See Also==
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_7803404}}, adds the Publication Abstract to the page
+[[Category: Desulfocurvibacter africanus]]
-(as it appears on PubMed at http://www.pubmed.gov), where 7803404 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Frey M]]
-{{ABSTRACT_PUBMED_7803404}}
+[[Category: Roth M]]
-==About this Structure==
-FXR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FXR OCA].
-==Reference==
-Crystal structure of the ferredoxin I from Desulfovibrio africanus at 2.3 A resolution., Sery A, Housset D, Serre L, Bonicel J, Hatchikian C, Frey M, Roth M, Biochemistry. 1994 Dec 27;33(51):15408-17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7803404 7803404]
-[[Category: Desulfovibrio africanus]]
-[[Category: Single protein]]
-[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
-[[Category: Electron transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 20:24:17 2009''