Proteopedia:Topic Pages: Difference between revisions
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[[Topic | [[Proteopedia:Topic_Pages|Topic Pages]] are pages about proteins or molecules or families of proteins or molecules, or [[About Macromolecular Structure|structural biology concepts or terms]]. Topic pages are not titled with a [[PDB]] code. In contrast to topic pages, [[Proteopedia]] contains a page for each entry in the PDB, created automatically, and titled with the PDB code. These pages generally describe a particular solved structure. A topic page like [[hemoglobin]], however, will address the protein in general, and refer to several solved structures such as [[1gzx]] and [[2hbs]]. And so, topic pages can be thought of as higher up in the heirarchy of page organization in Proteopedia than are PDB-code-titled pages. The list of structures related to a given topic page are listed on a related [[Proteopedia:3D structures pages|3D structures page]]. These pages are created manually, never automatically. | ||
You might also be interested in Proteopedia's [[Table of Contents]]. | |||
[[Image:New_yellow1.gif]] means that the article first became available in Proteopedia within the past four months, or that substantial new content was added within the past four months. See also [[What's New?]]. | |||
==Pages About Molecules (Not Titled with a PDB Code)== | ==Pages About Molecules (Not Titled with a PDB Code)== | ||
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The list below is intended to include all pages about molecules or families of molecules that are not named with a PDB code, and that also have substantial content. Because this list is manually maintained, it may be out of date. For comparison, here is an automatically generated list of [[Special:Allpages/a | all pages whose titles do not begin with a numeral]], and here is a list of [[Special:Allpages | all pages]]. | The list below is intended to include all pages about molecules or families of molecules that are not named with a PDB code, and that also have substantial content. Because this list is manually maintained, it may be out of date. For comparison, here is an automatically generated list of [[Special:Allpages/a | all pages whose titles do not begin with a numeral]], and here is a list of [[Special:Allpages | all pages]]. | ||
<big>'''See also: [[About Macromolecular Structure]]'''</big>, a list of pages not listed below. | <big><big>'''See also: [[About Macromolecular Structure]]'''</big>, a list of pages not listed below.</big> | ||
<!-- Start of topic pages. Please DON'T REMOVE --> | <!-- Start of topic pages. Please DON'T REMOVE --> | ||
===A | ===A=== | ||
*[[AChE inhibitors and substrates]] | *[[AChE inhibitors and substrates]], [[AChE inhibitors and substrates (Part II) | PartII]], [[AChE inhibitors and substrates (Part III) | PartIII]] | ||
**[[AChE bivalent inhibitors|AChE bivalent inhibitors, Part I]], [[AChE bivalent inhibitors (Part II)|Part II]] | **[[AChE bivalent inhibitors|AChE bivalent inhibitors, Part I]], [[AChE bivalent inhibitors (Part II)|Part II]] | ||
*[[Acetylcholine]] | *[[Acetylcholine]] | ||
| Line 16: | Line 20: | ||
*[[A Physical Model of the β2-Adrenergic Receptor|β2-Adrenergic Receptor, A Physical Model of the]] | *[[A Physical Model of the β2-Adrenergic Receptor|β2-Adrenergic Receptor, A Physical Model of the]] | ||
*[[Alpha-1-antitrypsin]] | *[[Alpha-1-antitrypsin]] | ||
*[[Pore forming toxin, α-hemolysin|α-hemolysin]] | |||
*[[Amino Acids]] with info about [[Selenocysteine]] and [[Pyrrolysine]] | |||
*[[Annexin]] | |||
*[[Antizyme Inhibitor]] | *[[Antizyme Inhibitor]] | ||
*[[Aquaporin]] | |||
*[[ATP Phosphoribosyl Transferase]] | *[[ATP Phosphoribosyl Transferase]] | ||
*[[Avian Influenza Neuraminidase, Tamiflu and Relenza]] | *[[Avian Influenza Neuraminidase, Tamiflu and Relenza]] | ||
*[[Avidin]] | |||
===B - C=== | |||
*[[Bacterial Intein-Like Domains (BILs)]] | *[[Bacterial Intein-Like Domains (BILs)]] | ||
*[[Believe It or Not!]] | *[[Believe It or Not!]] | ||
*[[Biotin Protein Ligase]] | *[[Biotin Protein Ligase]] | ||
*[[ | *[[C-di-GMP]] | ||
*[[C-di-GMP signaling]] | |||
*[[Chitinase]] | |||
*[[Cyt2Ba]] | *[[Cyt2Ba]] | ||
===D - | ===D - F=== | ||
*[[DHFR]] | *[[DHFR]] | ||
*[[Dihydrofolate reductase]] | *[[Dihydrofolate reductase]] | ||
*[[Directed evolution]] | |||
*[[DNA]] | *[[DNA]] | ||
*[[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1|DNA-binding protein VirE2 (''Agrobacterium'')]] | *[[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1|DNA-binding protein VirE2 (''Agrobacterium'')]] | ||
*[[Structure of E. coli DnaC helicase loader|DnaC helicase loader, structure of (''E. coli'')]] (homology model) | *[[Structure of E. coli DnaC helicase loader|DnaC helicase loader, structure of (''E. coli'')]] (homology model) | ||
*[[Dinoflagellate luciferase]] | |||
*[[Doppel]] | *[[Doppel]] | ||
*[[Dronpa]] | *[[Dronpa]] | ||
*[[Elastase]] | |||
*[[Eglin]] | |||
*[[Eran Hodis's Favorites]] | *[[Eran Hodis's Favorites]] | ||
*[[Eric Martz's Favorites]] | *[[Eric Martz's Favorites]] | ||
*[[Extremophiles]] | |||
<!-- *[[Fibrin]] --> | <!-- *[[Fibrin]] --> | ||
*[[Ferredoxin]] | |||
*[[Filamin]] | |||
*[[Flavodoxin]] | |||
*[[Forms of DNA]] | |||
===G - L=== | |||
*[[Gelsolin]] | |||
*[[Glycine]] | *[[Glycine]] | ||
*[[Glutamate receptor (GluA2)|The Glutamate Receptor]] | |||
*[[Gramicidin Channel in Lipid Bilayer]] | |||
*[[Green Fluorescent Protein]] | *[[Green Fluorescent Protein]] | ||
*[[Heme]] | *[[Heme]] | ||
*[[Hemoglobin]] | *[[Hemoglobin]] | ||
*[[Pore forming toxin, α-hemolysin|hemolysin]] | |||
*[[High school teachers' resources]] | |||
*[[Highest impact structures]] | *[[Highest impact structures]] | ||
*[[Hint auto-proteolytic protein-processing domains]] | *[[Hint auto-proteolytic protein-processing domains]] | ||
*[[Flaps Morph for HIV Protease|HIV Protease: Flaps Morph]] | |||
*[[Molecular Playground/HIV Protease Inhibitor|HIV Protease Inhibitor]] | |||
*[[Immunodeficiency virus protease]] | |||
*[[Intrinsically Disordered Protein]] | |||
*[[Ion channels]] | *[[Ion channels]] | ||
*[[Lac repressor]] | *[[Lac repressor]] | ||
*[[Lactose Permease]] | *[[Lactose Permease]] | ||
*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit|Large Ribosomal Subunit]] | |||
*[[Lipase]] | |||
*[[Lipase lid morph]] | |||
*[[Luciferase]] | |||
===M - | ===M - N=== | ||
*[[Major Histocompatibility Complex Class I]]: Crucial to your defenses against viruses, and one of the [[Highest impact structures | Highest Impact Structures of All Time]] | *[[Major Histocompatibility Complex Class I]]: Crucial to your defenses against viruses, and one of the [[Highest impact structures | Highest Impact Structures of All Time]] | ||
*[[Matrix metalloproteinases]] | *[[Matrix metalloproteinases]] | ||
*[[Mechanosensitive channels: opening and closing]] (includes morphs) | |||
*[[Membrane proteins]] | |||
*[[Metal-Ligand Polyhedra]] | |||
*[[Metalloproteases]] | *[[Metalloproteases]] | ||
*[[Morphs]] of conformational changes of macromolecules | *[[Morphs]] of conformational changes of macromolecules | ||
*[[NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol|NADH quinone oxidoreductase (NQO1)]] | *[[NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol|NADH quinone oxidoreductase (NQO1)]] | ||
*[[Nitrotyrosine]], a post-translational modification occurring in inflammation that often inactivates enzymes. | |||
*[[Nobel Prizes for 3D Molecular Structure]] including the 2009 Chemistry Prize for the [[Ribosome]] | |||
*[[Non-Standard Residues]], see also [[Standard Residues]] | |||
*[[Nucleoporin]] | |||
*[[Nucleosomes]] | *[[Nucleosomes]] | ||
===O - P=== | |||
*[[OhrR]] | *[[OhrR]] | ||
*[[P53]] | *[[P53]] | ||
*[[PcrA helicase]] | *[[PcrA helicase]] | ||
*[[Personal favorites]] | *[[Personal favorites]] | ||
*[[ | *[[Phosphoglucoisomerase]] | ||
*[[Photosystem II]] | *[[Photosystem II]] | ||
*[[Plant Viral Protein p19 Suppression of RNA Silencing]] | |||
*[[Porin]] | |||
*[[Prion protein]] | *[[Prion protein]] | ||
*[[Proton Channels]] (Includes an animated morph) | *[[Proton Channels]] (Includes an animated morph) | ||
*[[Pyrrolysine]] | |||
*[[Pyruvate phosphate dikinase]] | *[[Pyruvate phosphate dikinase]] | ||
===R | ===R=== | ||
*[[Recombinase A]] | |||
*[[Recoverin, a calcium-activated myristoyl switch]] | *[[Recoverin, a calcium-activated myristoyl switch]] | ||
*[[Human RecQ-Like protein 1|RecQ-Like protein 1, human]] | *[[Human RecQ-Like protein 1|RecQ-Like protein 1, human]] | ||
*[[Resolvase]] | |||
*[[Reverse transcriptase]] | |||
*[[Resolution]] | |||
*[[Ribosome]] | |||
*[[RNA motifs]] | |||
*[[Rop protein]] | *[[Rop protein]] | ||
===S=== | |||
*[[SGAP]] | *[[SGAP]] | ||
*[[Scene authoring tools]] | *[[Scene authoring tools]] | ||
*[[SelB Recognition]] | *[[SelB|SelB Recognition]] | ||
*[[Selenocysteine]] | |||
*[[Serine Protease]] | *[[Serine Protease]] | ||
*[[Serine hydrolase]] | *[[Serine hydrolase]] | ||
*[[Serum Paraoxonase]] | *[[Serum Paraoxonase]] | ||
*[[Severin]] | |||
*[[Site | Sites, Functional]] | *[[Site | Sites, Functional]] | ||
*[[ | *[[Standard Residues]] (see also [[Non-Standard Residues]] | ||
*[[ | *[[Strictosidine Synthase]] | ||
*[[Highest impact structures|Structures saving the most lives]] | |||
*[[Suppression of RNA Silencing by Viruses]] | |||
===T - Z=== | |||
*[[TATA-Binding Protein]] | *[[TATA-Binding Protein]] | ||
*[[Teaching Strategies Using Proteopedia]] | *[[Teaching Strategies Using Proteopedia]] | ||
*[[Telomerase]] | |||
*[[TEM1-beta-Lactamase/beta-lactamase Inhibitor Protein (BLIP)]] | |||
*[[Tetrameric alcohol dehydrogenases]] | |||
*[[Thermal motion of peptide]] | |||
*[[Herpes Simplex Virus Thymidine Kinase|Thymidine Kinase, Herpes Simplex Virus]] | |||
*[[Transcription Termination Factor Rho]] | *[[Transcription Termination Factor Rho]] | ||
*[[ | *[[Treatment of Gaucher disease]] | ||
*[[Tropomyosin]] | |||
*[[Tutorial:Ramachandran principle and phi psi angles]] | |||
*[[User:Eric Martz/Sandbox 8|Water]] with electrostatic potential surface / [[User:Gabriel Pons/Sandbox 1|El Agua]] | |||
*[[Villin]] | |||
*[[Vinculin]] | |||
*[[VirE1/VirE2]] | *[[VirE1/VirE2]] | ||
*[[Zinc Fingers]] | *[[Zinc Fingers]] | ||
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*[[1d9z]] The DNA repair protein UVRB in complex with ATP | *[[1d9z]] The DNA repair protein UVRB in complex with ATP | ||
*[[1gm5]] ''Thermotoga maritima'' RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork. [[Image:New_yellow1.gif]] | |||
*[[1eve]] Acetylcholinesterase complexed with the anti-Alzheimer's disease drug Aricept. | *[[1eve]] Acetylcholinesterase complexed with the anti-Alzheimer's disease drug Aricept. | ||
*[[1mr4]] Antifungal and insecticidal protein NaD1 from ''Nicotiana'' | *[[1mr4]] Antifungal and insecticidal protein NaD1 from ''Nicotiana'' | ||
| Line 99: | Line 172: | ||
*[[2cek]] ''Torpedo californica'' acetylcholinesterase (TcAChE) in complex with the bifunctional inhibitor NF595, a potentially new anti-Alzheimer drug. | *[[2cek]] ''Torpedo californica'' acetylcholinesterase (TcAChE) in complex with the bifunctional inhibitor NF595, a potentially new anti-Alzheimer drug. | ||
*[[2db3]] ''Drosophila melanogaster''DEAD-box helicase protein Vasa. [[Image:New_yellow1.gif]] | |||
*[[2eyq]] ''Escherichia coli'' Mfd (TRCF, transcription-repair coupling factor). [[Image:New_yellow1.gif]] | |||
*[[2ic8]] ''Escherichia coli'' GlpG, an integral membrane protein that belongs to the widespread rhomboid protease family | *[[2ic8]] ''Escherichia coli'' GlpG, an integral membrane protein that belongs to the widespread rhomboid protease family | ||
*[[2p18]] ''Leishmania infantum'' Glyoxalase II | *[[2p18]] ''Leishmania infantum'' Glyoxalase II | ||
| Line 105: | Line 180: | ||
*[[2v9d]] A prophage protein belonging to the dihydrodipicolinic acid synthase family | *[[2v9d]] A prophage protein belonging to the dihydrodipicolinic acid synthase family | ||
*[[2veo]] X-ray structure of ''Candida antarctica'' lipase A in its closed state | *[[2veo]] X-ray structure of ''Candida antarctica'' lipase A in its closed state | ||
*[[3ews]] Human DExD/H-box RNA-dependent ATPase DDX19 in the open and [[3g0h|closed]] cleft conformation (includes morph). [[Image:New_yellow1.gif]] | |||
*[[3dmq]] ''Escherichia coli'' Swi2/Snf2 protein RapA that recycles RNA polymerase during transcription. [[Image:New_yellow1.gif]] | |||
*[[5p21]] The crystal structure of the H-ras oncogene protein p21 complexed to the slowly hydrolysing GTP analogue GppNp | *[[5p21]] The crystal structure of the H-ras oncogene protein p21 complexed to the slowly hydrolysing GTP analogue GppNp | ||