3gd6: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:3gd6.jpg|left|200px]]
-<!--
+==Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with phosphate==
-The line below this paragraph, containing "STRUCTURE_3gd6", creates the "Structure Box" on the page.
+<StructureSection load='3gd6' size='340' side='right'caption='[[3gd6]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3gd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oceanobacillus_iheyensis_HTE831 Oceanobacillus iheyensis HTE831]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GD6 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-{{STRUCTURE_3gd6|  PDB=3gd6  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gd6 OCA], [https://pdbe.org/3gd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gd6 RCSB], [https://www.ebi.ac.uk/pdbsum/3gd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gd6 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GALRD_OCEIH GALRD_OCEIH] Catalyzes the regioselective dehydration of galactarate into 2-keto-D-threo-4,5-dihydroxyadipate ((2S,3R)-dihydroxy-5-oxohexanedioate). Is not active on other acid sugars.<ref>PMID:19883118</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gd6_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gd6 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with phosphate===
+==See Also==
+*[[Enolase 3D structures|Enolase 3D structures]]
+*[[Muconate cycloisomerase|Muconate cycloisomerase]]
-==About this Structure==
+== References ==
-GD6 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Oceanobacillus_iheyensis_hte831 Oceanobacillus iheyensis hte831]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GD6 OCA].
+<references/>
-[[Category: Oceanobacillus iheyensis hte831]]
+__TOC__
-[[Category: Almo, S C.]]
+</StructureSection>
-[[Category: Burley, S K.]]
+[[Category: Large Structures]]
-[[Category: Fedorov, A A.]]
+[[Category: Oceanobacillus iheyensis HTE831]]
-[[Category: Fedorov, E V.]]
+[[Category: Almo SC]]
-[[Category: Gerlt, J A.]]
+[[Category: Burley SK]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Fedorov AA]]
-[[Category: Sauder, J M.]]
+[[Category: Fedorov EV]]
-[[Category: Divergent enolase]]
+[[Category: Gerlt JA]]
-[[Category: Isomerase]]
+[[Category: Sauder JM]]
-[[Category: Lyase]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Target 9375a]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar  4 15:04:35 2009''