Sandbox Eric Martz: Difference between revisions
Eric Martz (talk | contribs) x |
Eric Martz (talk | contribs) x |
||
| (One intermediate revision by the same user not shown) | |||
| Line 121: | Line 121: | ||
<scene name='Sandbox_Eric_Martz/Trimer_morph/1'>Load and Animate Trimer Morph</scene>. | <scene name='Sandbox_Eric_Martz/Trimer_morph/1'>Load and Animate Trimer Morph</scene>. | ||
The model [[3dqv]] contains two copies of the trimer in the asymmetric unit. Morphing<ref>trimer morph</ref> one to the other shows flexibility of the trimer. The position of RING changes the most because of its flexible tether to Cullin. The two positions of RING in the crystal structure are undoubtedly stabilized by different crystal contacts (not shown here, but [http://proteinexplorer.org/xtlcon.htm could be shown]). | The model [[3dqv]] contains two copies of the trimer in the asymmetric unit. Morphing<ref>The trimer morph [[Image:3dqv_trimer1_trimer2_morph.pdb.gz]] was generated from 3dqv_1.mmol and 3dqv_2.mmol (obtained from [http://www.ebi.ac.uk/msd-srv/pqs/pqs-bin/macmol.pl?filename=3DQV PQS]) with the Yale Morph Server (beta version), ID [http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b318728-3599 b318728-3599]. The chains B, D, and Y in 3dqv_2.mmol were first renamed to A, C, and R in order to match up with those in 3dqv_1.mmol, using [[DeepView]].</ref> one to the other shows flexibility of the trimer. The position of RING changes the most because of its flexible tether to Cullin. The two positions of RING in the crystal structure are undoubtedly stabilized by different crystal contacts (not shown here, but [http://proteinexplorer.org/xtlcon.htm could be shown]). | ||
To reload the NEDD8ylation morph into Jmol above, simply reload this page. | |||
<!-- | <!-- | ||