2gpv: Difference between revisions

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-{{Seed}}
-[[Image:2gpv.png|left|200px]]
-<!--
+==Estrogen Related Receptor-gamma ligand binding domain complexed with 4-hydroxy-tamoxifen and a SMRT peptide==
-The line below this paragraph, containing "STRUCTURE_2gpv", creates the "Structure Box" on the page.
+<StructureSection load='2gpv' size='340' side='right'caption='[[2gpv]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2gpv]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPV FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OHT:4-HYDROXYTAMOXIFEN'>OHT</scene></td></tr>
-{{STRUCTURE_2gpv|  PDB=2gpv  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpv OCA], [https://pdbe.org/2gpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpv RCSB], [https://www.ebi.ac.uk/pdbsum/2gpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpv ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ERR3_HUMAN ERR3_HUMAN] Orphan receptor that acts as transcription activator in the absence of bound ligand. Binds specifically to an estrogen response element and activates reporter genes controlled by estrogen response elements (By similarity).<ref>PMID:19067653</ref> <ref>PMID:18063693</ref> <ref>PMID:11864604</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpv_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gpv ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+X-ray crystal structures of the ligand binding domain (LBD) of the estrogen-related receptor-gamma (ERRgamma) were determined that describe this receptor in three distinct states: unliganded, inverse agonist bound, and agonist bound. Two structures were solved for the unliganded state, the ERRgamma LBD alone, and in complex with a coregulator peptide representing a portion of receptor interacting protein 140 (RIP140). No significant differences were seen between these structures that both exhibited the conformation of ERRgamma seen in studies with other coactivators. Two structures were obtained describing the inverse agonist-bound state, the ERRgamma LBD with 4-hydroxytamoxifen (4-OHT), and the ERRgamma LBD with 4-OHT and a peptide representing a portion of the silencing mediator of retinoid and thyroid hormone action protein (SMRT). The 4-OHT structure was similar to other reported inverse agonist bound structures, showing reorientation of phenylalanine 435 and a displacement of the AF-2 helix relative to the unliganded structures with little other rearrangement occurring. No significant changes to the LBD appear to be induced by peptide binding with the addition of the SMRT peptide to the ERRgamma plus 4-OHT complex. The observed agonist-bound state contains the ERRgamma LBD, a ligand (GSK4716), and the RIP140 peptide and reveals an unexpected rearrangement of the phenol-binding residues. Thermal stability studies show that agonist binding leads to global stabilization of the ligand binding domain. In contrast to the conventional mechanism of nuclear receptor ligand activation, activation of ERRgamma by GSK4716 does not appear to involve a major rearrangement or significant stabilization of the C-terminal helix.
-===Estrogen Related Receptor-gamma ligand binding domain complexed with 4-hydroxy-tamoxifen and a SMRT peptide===
+X-ray crystal structures of the estrogen-related receptor-gamma ligand binding domain in three functional states reveal the molecular basis of small molecule regulation.,Wang L, Zuercher WJ, Consler TG, Lambert MH, Miller AB, Orband-Miller LA, McKee DD, Willson TM, Nolte RT J Biol Chem. 2006 Dec 8;281(49):37773-81. Epub 2006 Sep 21. PMID:16990259<ref>PMID:16990259</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2gpv" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_16990259}}, adds the Publication Abstract to the page
+*[[Estrogen-related receptor|Estrogen-related receptor]]
-(as it appears on PubMed at http://www.pubmed.gov), where 16990259 is the PubMed ID number.
+*[[Estrogen-related receptor 3D structures|Estrogen-related receptor 3D structures]]
--->
+*[[Nuclear receptor corepressor|Nuclear receptor corepressor]]
-{{ABSTRACT_PUBMED_16990259}}
+== References ==
+<references/>
-==About this Structure==
+__TOC__
-GPV is a 9 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPV OCA].
+</StructureSection>
-==Reference==
-<ref group="xtra">PMID:16990259</ref><references group="xtra"/>
 [[Category: Homo sapiens]]
-[[Category: Consler, T G.]]
+[[Category: Large Structures]]
-[[Category: Lambert, M H.]]
+[[Category: Consler TG]]
-[[Category: McKee, D D.]]
+[[Category: Lambert MH]]
-[[Category: Miller, A B.]]
+[[Category: McKee DD]]
-[[Category: Nolte, R T.]]
+[[Category: Miller AB]]
-[[Category: Osband-miller, L A.]]
+[[Category: Nolte RT]]
-[[Category: Wang, L.]]
+[[Category: Osband-miller LA]]
-[[Category: Willson, T M.]]
+[[Category: Wang L]]
-[[Category: Zuercher, W J.]]
+[[Category: Willson TM]]
-[[Category: Err]]
+[[Category: Zuercher WJ]]
-[[Category: Errg]]
-[[Category: Esrrg]]
-[[Category: Estrogen related receptor]]
-[[Category: Nuclear receptor]]
-[[Category: Smrt]]
-[[Category: Steroid receptor]]
-[[Category: Tamoxifen]]
-[[Category: Transcription]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:10:14 2009''