1j9t: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1j9t.png|left|200px]]
-<!--
+==Crystal structure of nitrite soaked reduced H255N AFNIR==
-The line below this paragraph, containing "STRUCTURE_1j9t", creates the "Structure Box" on the page.
+<StructureSection load='1j9t' size='340' side='right'caption='[[1j9t]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1j9t]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J9T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J9T FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
-{{STRUCTURE_1j9t|  PDB=1j9t  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j9t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j9t OCA], [https://pdbe.org/1j9t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j9t RCSB], [https://www.ebi.ac.uk/pdbsum/1j9t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j9t ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NIR_ALCFA NIR_ALCFA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j9t_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j9t ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of nitrite soaked reduced H255N AFNIR===
+==See Also==
+*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11478880}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 11478880 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_11478880}}
-==About this Structure==
-J9T is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J9T OCA].
-==Reference==
-<ref group="xtra">PMID:11478880</ref><references group="xtra"/>
 [[Category: Alcaligenes faecalis]]
-[[Category: Boulanger, M J.]]
+[[Category: Large Structures]]
-[[Category: Murphy, M E.]]
+[[Category: Boulanger MJ]]
-[[Category: Cupredoxin fold nitrite copper]]
+[[Category: Murphy ME]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:13:47 2009''