2eip: Difference between revisions

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OCA

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-[[Image:2eip.jpg|left|200px]]<br /><applet load="2eip" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2eip, resolution 2.2&Aring;" />
-'''INORGANIC PYROPHOSPHATASE'''<br />
-==Overview==
+==INORGANIC PYROPHOSPHATASE==
-The refined crystal structures of hexameric soluble inorganic, pyrophosphatase from E. coli (E-PPase) are reported to R factors of 18.7, and 18.3% at 2.15 and 2.2 A, respectively. The first contains one, independent monomer; the other, two independent monomers, in an R32 unit, cell. Because the E-PPase monomer is small with a large open active site, there are relatively few hydrophobic interactions that connect the, active-site loops to the five-stranded twisted beta-barrel that is the, hydrophobic core of the molecule. The active-site loops are, however, held, in place by interactions between monomers around the threefold and twofold, symmetry axes of the D(3) hexamer. Consequently, mutations of active-site, residues (such as Glu20 and Lysl04) often affect protein stability and, oligomeric structure. Conversely, mutations of residues in the interface, between monomers (such as His136 and Hisl40) not only affect oligomeric, structure but also affect active-site function. The effects of the H136Q, and H140Q variants can be explained by the extended ionic interaction, between H140, D143 and H136' of the neighbouring monomer. This interaction, is further buttressed by an extensive hydrogen-bonding network that, appears to explain why the E-PPase hexamer is so stable and also why the, H136Q and H140Q variant proteins are less stable as hexamers.
+<StructureSection load='2eip' size='340' side='right'caption='[[2eip]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2eip]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eip 1eip]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EIP FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eip OCA], [https://pdbe.org/2eip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eip RCSB], [https://www.ebi.ac.uk/pdbsum/2eip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eip ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/IPYR_ECOLI IPYR_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2eip_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eip ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-EIP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure superseeds the now removed PDB entry 1EIP. Active as [http://en.wikipedia.org/wiki/Inorganic_diphosphatase Inorganic diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.1 3.6.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2EIP OCA].
+*[[Inorganic pyrophosphatase 3D structures|Inorganic pyrophosphatase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-Structure of Escherichia coli inorganic pyrophosphatase at 2.2 A resolution., Kankare J, Salminen T, Lahti R, Cooperman BS, Baykov AA, Goldman A, Acta Crystallogr D Biol Crystallogr. 1996 May 1;52(Pt 3):551-63. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15299678 15299678]
 [[Category: Escherichia coli]]
-[[Category: Inorganic diphosphatase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Goldman A]]
-[[Category: Goldman, A.]]
+[[Category: Kankare JA]]
-[[Category: Kankare, J.A.]]
+[[Category: Salminen T]]
-[[Category: Salminen, T.]]
-[[Category: hydrolase]]
-[[Category: inorganic pyrophoshatase]]
-[[Category: magnesium]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:04:32 2007''