2dcl: Difference between revisions

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New page: left|200px<br /><applet load="2dcl" size="450" color="white" frame="true" align="right" spinBox="true" caption="2dcl, resolution 2.28Å" /> '''Structure of PH1503 ...
 
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[[Image:2dcl.gif|left|200px]]<br /><applet load="2dcl" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2dcl, resolution 2.28&Aring;" />
'''Structure of PH1503 protein from Pyrococcus Horikoshii OT3'''<br />


==About this Structure==
==Structure of PH1503 protein from Pyrococcus Horikoshii OT3==
2DCL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with AMP as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2DCL OCA].  
<StructureSection load='2dcl' size='340' side='right'caption='[[2dcl]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2dcl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCL FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcl OCA], [https://pdbe.org/2dcl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcl RCSB], [https://www.ebi.ac.uk/pdbsum/2dcl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcl ProSAT], [https://www.topsan.org/Proteins/RSGI/2dcl TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Y1503_PYRHO Y1503_PYRHO]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcl_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcl ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
[[Category: Single protein]]
[[Category: Bagautdinov B]]
[[Category: Bagautdinov, B.]]
[[Category: Kunishima N]]
[[Category: Kunishima, N.]]
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
[[Category: AMP]]
[[Category: hexamer]]
[[Category: national project on protein structural and functional analyses]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomics]]
[[Category: x-ray diffraction]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:32:06 2007''

Latest revision as of 11:25, 25 October 2023

Structure of PH1503 protein from Pyrococcus Horikoshii OT3Structure of PH1503 protein from Pyrococcus Horikoshii OT3

Structural highlights

2dcl is a 3 chain structure with sequence from Pyrococcus horikoshii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.28Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Y1503_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2dcl, resolution 2.28Å

Drag the structure with the mouse to rotate

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OCA
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