2jin: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2jin.png|left|200px]]


<!--
==Crystal structure of PDZ domain of Synaptojanin-2 binding protein==
The line below this paragraph, containing "STRUCTURE_2jin", creates the "Structure Box" on the page.
<StructureSection load='2jin' size='340' side='right'caption='[[2jin]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2jin]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JIN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2jin|  PDB=2jin  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jin OCA], [https://pdbe.org/2jin PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jin RCSB], [https://www.ebi.ac.uk/pdbsum/2jin PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jin ProSAT]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF PDZ DOMAIN OF SYNAPTOJANIN-2 BINDING PROTEIN===
== Function ==
 
[https://www.uniprot.org/uniprot/SYJ2B_HUMAN SYJ2B_HUMAN]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2JIN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIN OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jin_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jin ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Arrowsmith, C H.]]
[[Category: Large Structures]]
[[Category: Cooper, C.]]
[[Category: Arrowsmith CH]]
[[Category: Doyle, D.]]
[[Category: Cooper C]]
[[Category: Edwards, A.]]
[[Category: Doyle D]]
[[Category: Elkins, J.]]
[[Category: Edwards A]]
[[Category: Phillips, C.]]
[[Category: Elkins J]]
[[Category: Pike, A C.W.]]
[[Category: Phillips C]]
[[Category: Salah, E.]]
[[Category: Pike ACW]]
[[Category: Sundstrom, M.]]
[[Category: Salah E]]
[[Category: Tickle, J.]]
[[Category: Sundstrom M]]
[[Category: Turnbull, A P.]]
[[Category: Tickle J]]
[[Category: Weigelt, J.]]
[[Category: Turnbull AP]]
[[Category: Membrane]]
[[Category: Weigelt J]]
[[Category: Membrane protein]]
[[Category: Mitochondria distribution]]
[[Category: Mitochondrion]]
[[Category: Outer membrane]]
[[Category: Pdz]]
[[Category: Scaffold]]
[[Category: Transmembrane]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:58:45 2009''

Latest revision as of 17:50, 13 December 2023

Crystal structure of PDZ domain of Synaptojanin-2 binding proteinCrystal structure of PDZ domain of Synaptojanin-2 binding protein

Structural highlights

2jin is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SYJ2B_HUMAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2jin, resolution 1.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA