2cyd: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2cyd.gif|left|200px]]<br /><applet load="2cyd" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2cyd, resolution 2.80&Aring;" />
-'''Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae'''<br />
-==About this Structure==
+==Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae==
-CYD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae] with LI, LHG and UMQ as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA].
+<StructureSection load='2cyd' size='340' side='right'caption='[[2cyd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2cyd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYD FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=UMQ:UNDECYL-MALTOSIDE'>UMQ</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyd OCA], [https://pdbe.org/2cyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyd RCSB], [https://www.ebi.ac.uk/pdbsum/2cyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyd ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyd TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NTPK_ENTHA NTPK_ENTHA] Involved in ATP-driven sodium extrusion.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyd ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[ATPase 3D structures|ATPase 3D structures]]
+__TOC__
+</StructureSection>
 [[Category: Enterococcus hirae]]
-[[Category: H(+)-transporting two-sector ATPase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Kakinuma Y]]
-[[Category: Kakinuma, Y.]]
+[[Category: Murata T]]
-[[Category: Murata, T.]]
+[[Category: Shirouzu M]]
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+[[Category: Walker JE]]
-[[Category: Shirouzu, M.]]
+[[Category: Yamato I]]
-[[Category: Walker, J.E.]]
+[[Category: Yokoyama S]]
-[[Category: Yamato, I.]]
-[[Category: Yokoyama, S.]]
-[[Category: LHG]]
-[[Category: LI]]
-[[Category: UMQ]]
-[[Category: enterococcus]]
-[[Category: lithium]]
-[[Category: na(+)-atpase]]
-[[Category: national project on protein structural and functional analyses]]
-[[Category: nppsfa]]
-[[Category: ntpk]]
-[[Category: proteolipid]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomics]]
-[[Category: v-atpase]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:20:39 2007''