1pv9: Difference between revisions

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[[Image:1pv9.png|left|200px]]


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==Prolidase from Pyrococcus furiosus==
The line below this paragraph, containing "STRUCTURE_1pv9", creates the "Structure Box" on the page.
<StructureSection load='1pv9' size='340' side='right'caption='[[1pv9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pv9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PV9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PV9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1pv9|  PDB=1pv9  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pv9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pv9 OCA], [https://pdbe.org/1pv9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pv9 RCSB], [https://www.ebi.ac.uk/pdbsum/1pv9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pv9 ProSAT]</span></td></tr>
 
</table>
===Prolidase from Pyrococcus furiosus===
== Function ==
 
[https://www.uniprot.org/uniprot/PEPQ_PYRFU PEPQ_PYRFU] Splits dipeptides with a prolyl in the C-terminal position and a nonpolar amino acid at the N-terminal position.<ref>PMID:9733678</ref>  
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pv/1pv9_consurf.spt"</scriptWhenChecked>
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1PV9 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PV9 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pv9 ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:15005612</ref><references group="xtra"/>
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
[[Category: Xaa-Pro dipeptidase]]
[[Category: Adams MW]]
[[Category: Adams, M W.]]
[[Category: Freeman HC]]
[[Category: Freeman, H C.]]
[[Category: Ghosh M]]
[[Category: Ghosh, M.]]
[[Category: Grunden AM]]
[[Category: Grunden, A M.]]
[[Category: Guss JM]]
[[Category: Guss, J M.]]
[[Category: Maher MJ]]
[[Category: Maher, M J.]]
[[Category: Menon AL]]
[[Category: Menon, A L.]]
[[Category: Peptidase]]
[[Category: Prolidase]]
[[Category: Zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:03:25 2009''

Latest revision as of 11:11, 14 February 2024

Prolidase from Pyrococcus furiosusProlidase from Pyrococcus furiosus

Structural highlights

1pv9 is a 2 chain structure with sequence from Pyrococcus furiosus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PEPQ_PYRFU Splits dipeptides with a prolyl in the C-terminal position and a nonpolar amino acid at the N-terminal position.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Ghosh M, Grunden AM, Dunn DM, Weiss R, Adams MW. Characterization of native and recombinant forms of an unusual cobalt-dependent proline dipeptidase (prolidase) from the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol. 1998 Sep;180(18):4781-9. PMID:9733678

1pv9, resolution 2.00Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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