2ajt: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2ajt.gif|left|200px]]<br /><applet load="2ajt" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2ajt, resolution 2.60&Aring;" />
-'''Crystal structure of L-Arabinose Isomerase from E.coli'''<br />
-==Overview==
+==Crystal structure of L-Arabinose Isomerase from E.coli==
-Escherichia coli L-arabinose isomerase (ECAI; EC 5.3.1.4) catalyzes the, isomerization of L-arabinose to L-ribulose in vivo. This enzyme is also of, commercial interest as it catalyzes the conversion of D-galactose to, D-tagatose in vitro. The crystal structure of ECAI was solved and refined, at 2.6 A resolution. The subunit structure of ECAI is organised into three, domains: an N-terminal, a central and a C-terminal domain. It forms a, crystallographic trimeric architecture in the asymmetric unit. Packing, within the crystal suggests the idea that ECAI can form a hexameric, assembly. Previous electron microscopic and biochemical studies supports, that ECAI is hexameric in solution. A comparison with other known, structures reveals that ECAI adopts a protein fold most similar to E. coli, fucose isomerase (ECFI) despite very low sequence identity 9.7%. The, structural similarity between ECAI and ECFI with regard to number of, domains, overall fold, biological assembly, and active site architecture, strongly suggests that the enzymes have functional similarities. Further, the crystal structure of ECAI forms a basis for identifying molecular, determinants responsible for isomerization of arabinose to ribulose in, vivo and galactose to tagatose in vitro.
+<StructureSection load='2ajt' size='340' side='right'caption='[[2ajt]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+== Structural highlights ==
-==About this Structure==
+<table><tr><td colspan='2'>[[2ajt]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AJT FirstGlance]. <br>
-AJT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Active as [http://en.wikipedia.org/wiki/L-arabinose_isomerase L-arabinose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.4 5.3.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2AJT OCA].
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ajt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ajt OCA], [https://pdbe.org/2ajt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ajt RCSB], [https://www.ebi.ac.uk/pdbsum/2ajt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ajt ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ajt TOPSAN]</span></td></tr>
-==Reference==
+</table>
-Crystal structure of Escherichia coli L-arabinose isomerase (ECAI), the putative target of biological tagatose production., Manjasetty BA, Chance MR, J Mol Biol. 2006 Jul 7;360(2):297-309. Epub 2006 May 5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16756997 16756997]
+== Function ==
+[https://www.uniprot.org/uniprot/ARAA_ECOLI ARAA_ECOLI] Catalyzes the conversion of L-arabinose to L-ribulose.[HAMAP-Rule:MF_00519]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aj/2ajt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ajt ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: L-arabinose isomerase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Almo SC]]
-[[Category: Almo, S.C.]]
+[[Category: Burley SK]]
-[[Category: Burley, S.K.]]
+[[Category: Chance MR]]
-[[Category: Chance, M.R.]]
+[[Category: Fedorov EV]]
-[[Category: Fedorov, E.V.]]
+[[Category: Manjasetty BA]]
-[[Category: Manjasetty, B.A.]]
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
-[[Category: arabinose catabolism]]
-[[Category: carbohydrate metabolism]]
-[[Category: isomerase]]
-[[Category: new york structural genomix research consortium]]
-[[Category: nysgxrc]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomics]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:10:34 2007''