1jhd: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1jhd.png|left|200px]]
-<!--
+==Crystal Structure of Bacterial ATP Sulfurylase from the Riftia pachyptila Symbiont==
-The line below this paragraph, containing "STRUCTURE_1jhd", creates the "Structure Box" on the page.
+<StructureSection load='1jhd' size='340' side='right'caption='[[1jhd]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1jhd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfur-oxidizing_endosymbiont_of_Riftia_pachyptila Sulfur-oxidizing endosymbiont of Riftia pachyptila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JHD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1jhd|  PDB=1jhd  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jhd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jhd OCA], [https://pdbe.org/1jhd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jhd RCSB], [https://www.ebi.ac.uk/pdbsum/1jhd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jhd ProSAT]</span></td></tr>
+</table>
-===Crystal Structure of Bacterial ATP Sulfurylase from the Riftia pachyptila Symbiont===
+== Function ==
+[https://www.uniprot.org/uniprot/SAT_RIFPS SAT_RIFPS]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_11724564}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 11724564 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jh/1jhd_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_11724564}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-JHD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JHD OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jhd ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:11724564</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Bacteria]]
+[[Category: Large Structures]]
-[[Category: Sulfate adenylyltransferase]]
+[[Category: Sulfur-oxidizing endosymbiont of Riftia pachyptila]]
-[[Category: Beynon, J D.]]
+[[Category: Beynon JD]]
-[[Category: Fisher, A J.]]
+[[Category: Fisher AJ]]
-[[Category: Huston, S L.]]
+[[Category: Huston SL]]
-[[Category: MacRae, I J.]]
+[[Category: MacRae IJ]]
-[[Category: Nelson, D C.]]
+[[Category: Nelson DC]]
-[[Category: Segel, I H.]]
+[[Category: Segel IH]]
-[[Category: Adenylyl transferase]]
-[[Category: Ap]]
-[[Category: Bromide]]
-[[Category: Chemoautotroph]]
-[[Category: Sulfurylase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:18:17 2009''