1b5e: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:1b5e.png|left|200px]]
-<!--
+==DCMP HYDROXYMETHYLASE FROM T4==
-The line below this paragraph, containing "STRUCTURE_1b5e", creates the "Structure Box" on the page.
+<StructureSection load='1b5e' size='340' side='right'caption='[[1b5e]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1b5e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B5E FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCM:2-DEOXYCYTIDINE-5-MONOPHOSPHATE'>DCM</scene></td></tr>
-{{STRUCTURE_1b5e|  PDB=1b5e  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b5e OCA], [https://pdbe.org/1b5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b5e RCSB], [https://www.ebi.ac.uk/pdbsum/1b5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b5e ProSAT]</span></td></tr>
+</table>
-===DCMP HYDROXYMETHYLASE FROM T4===
+== Function ==
+[https://www.uniprot.org/uniprot/DCHM_BPT4 DCHM_BPT4]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_10064578}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 10064578 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/1b5e_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_10064578}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-B5E is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B5E OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b5e ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:10064578</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Deoxycytidylate 5-hydroxymethyltransferase]]
+[[Category: Escherichia virus T4]]
-[[Category: Enterobacteria phage t4]]
+[[Category: Large Structures]]
-[[Category: Sohn, S H.]]
+[[Category: Sohn SH]]
-[[Category: Song, H K.]]
+[[Category: Song HK]]
-[[Category: Suh, S W.]]
+[[Category: Suh SW]]
-[[Category: Dntp synthesizing complex]]
-[[Category: Hydroxymethylase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:23:25 2009''