1yp9: Difference between revisions

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New page: left|200px<br /><applet load="1yp9" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yp9, resolution 2.10Å" /> '''Trypsin Inhibitor Co...
 
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[[Image:1yp9.gif|left|200px]]<br /><applet load="1yp9" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1yp9, resolution 2.10&Aring;" />
'''Trypsin Inhibitor Complex'''<br />


==About this Structure==
==Trypsin Inhibitor Complex==
1YP9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with CA, UIZ and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YP9 OCA].  
<StructureSection load='1yp9' size='340' side='right'caption='[[1yp9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1yp9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YP9 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UIZ:(1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YLMETHYL)-1-BENZYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROZILIN-4-YL-BENZAMIDINE'>UIZ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yp9 OCA], [https://pdbe.org/1yp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yp9 RCSB], [https://www.ebi.ac.uk/pdbsum/1yp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yp9 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yp/1yp9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yp9 ConSurf].
<div style="clear:both"></div>


==Reference==
==See Also==
A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates., Fokkens J, Klebe G, Angew Chem Int Ed Engl. 2006 Jan 30;45(6):985-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16374786 16374786]
*[[Trypsin 3D structures|Trypsin 3D structures]]
__TOC__
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Trypsin]]
[[Category: Diederich F]]
[[Category: Diederich, F.]]
[[Category: Fokkens J]]
[[Category: Fokkens, J.]]
[[Category: Heine A]]
[[Category: Heine, A.]]
[[Category: Klebe G]]
[[Category: Klebe, G.]]
[[Category: Obst-Sander U]]
[[Category: Obst-Sander, U.]]
[[Category: CA]]
[[Category: GOL]]
[[Category: UIZ]]
[[Category: 6 stranded beta-sheet]]
[[Category: barrel]]
[[Category: inhibitor complex]]
[[Category: trypsin]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:57:51 2007''

Latest revision as of 10:44, 23 October 2024

Trypsin Inhibitor ComplexTrypsin Inhibitor Complex

Structural highlights

1yp9 is a 1 chain structure with sequence from Bos taurus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TRY1_BOVIN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1yp9, resolution 2.10Å

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OCA
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