2r2d: Difference between revisions

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[[Image:2r2d.png|left|200px]]


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==Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens==
The line below this paragraph, containing "STRUCTURE_2r2d", creates the "Structure Box" on the page.
<StructureSection load='2r2d' size='340' side='right'caption='[[2r2d]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r2d]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R2D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_2r2d|  PDB=2r2d  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r2d OCA], [https://pdbe.org/2r2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r2d RCSB], [https://www.ebi.ac.uk/pdbsum/2r2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r2d ProSAT]</span></td></tr>
 
</table>
===Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens===
== Function ==
 
[https://www.uniprot.org/uniprot/AHLLB_AGRFC AHLLB_AGRFC]  
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r2/2r2d_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17900178}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2R2D is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R2D OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r2d ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:17900178</ref><references group="xtra"/>
</StructureSection>
[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Fast, W.]]
[[Category: Large Structures]]
[[Category: Hoang, Q.]]
[[Category: Fast W]]
[[Category: Liu, D.]]
[[Category: Hoang Q]]
[[Category: Momb, J.]]
[[Category: Liu D]]
[[Category: Petsko, G A.]]
[[Category: Momb J]]
[[Category: Ringe, D.]]
[[Category: Petsko GA]]
[[Category: Thomas, P W.]]
[[Category: Ringe D]]
[[Category: Agrobacterium tumefacien]]
[[Category: Thomas PW]]
[[Category: Aiib]]
[[Category: Di-nuclear zinc center]]
[[Category: Hydrolase]]
[[Category: Lactonase]]
[[Category: N-acyl hompserine lactone]]
[[Category: Phosphate]]
[[Category: Quorum quenching]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:42:44 2009''

Latest revision as of 12:19, 21 February 2024

Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciensStructure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens

Structural highlights

2r2d is a 6 chain structure with sequence from Agrobacterium fabrum str. C58. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

AHLLB_AGRFC

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2r2d, resolution 1.75Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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