1pt5: Difference between revisions

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[[Image:1pt5.png|left|200px]]


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==Crystal structure of gene yfdW of E. coli==
The line below this paragraph, containing "STRUCTURE_1pt5", creates the "Structure Box" on the page.
<StructureSection load='1pt5' size='340' side='right'caption='[[1pt5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pt5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PT5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PT5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene></td></tr>
{{STRUCTURE_1pt5|  PDB=1pt5  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pt5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pt5 OCA], [https://pdbe.org/1pt5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pt5 RCSB], [https://www.ebi.ac.uk/pdbsum/1pt5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pt5 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of gene yfdW of E. coli===
== Function ==
 
[https://www.uniprot.org/uniprot/FCTA_ECOLI FCTA_ECOLI] Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12844490}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12844490 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pt/1pt5_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12844490}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1PT5 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli,_and_shigella_flexneri Escherichia coli, and shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PT5 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pt5 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:12844490</ref><references group="xtra"/>
</StructureSection>
[[Category: Escherichia coli, and shigella flexneri]]
[[Category: Escherichia coli]]
[[Category: Cambillau, C.]]
[[Category: Large Structures]]
[[Category: Campanacci, V.]]
[[Category: Shigella flexneri]]
[[Category: Gruez, A.]]
[[Category: Cambillau C]]
[[Category: Roig-Zamboni, V.]]
[[Category: Campanacci V]]
[[Category: Valencia, C.]]
[[Category: Gruez A]]
[[Category: Acetylcoa]]
[[Category: Roig-Zamboni V]]
[[Category: Coenzyme binding]]
[[Category: Valencia C]]
[[Category: Structural genomic]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:04:06 2009''

Latest revision as of 11:10, 14 February 2024

Crystal structure of gene yfdW of E. coliCrystal structure of gene yfdW of E. coli

Structural highlights

1pt5 is a 2 chain structure with sequence from Escherichia coli and Shigella flexneri. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FCTA_ECOLI Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1pt5, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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