1y1t: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1y1t.gif|left|200px]]<br /><applet load="1y1t" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1y1t, resolution 1.77&Aring;" />
-'''Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A Resolution'''<br />
-==About this Structure==
+==Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A Resolution==
-Y1T is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium] with SO4 and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Y1T OCA].
+<StructureSection load='1y1t' size='340' side='right'caption='[[1y1t]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
-[[Category: Salmonella typhimurium]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[1y1t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y1T FirstGlance]. <br>
-[[Category: Uridine phosphorylase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-[[Category: Betzel, C.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Dontsova, M.V.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1t OCA], [https://pdbe.org/1y1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y1t RCSB], [https://www.ebi.ac.uk/pdbsum/1y1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1t ProSAT]</span></td></tr>
-[[Category: Ealick, S.E.]]
+</table>
-[[Category: Gabdoulkhakov, A.G.]]
+== Function ==
-[[Category: Kachalova, G.S.]]
+[https://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
-[[Category: Mikhailov, A.M.]]
+== Evolutionary Conservation ==
-[[Category: GOL]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: SO4]]
+Check<jmol>
-[[Category: nucleoside phosphorylase]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1t_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1t ConSurf].
+<div style="clear:both"></div>
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:29:59 2007''
+==See Also==
+*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
+[[Category: Betzel C]]
+[[Category: Dontsova MV]]
+[[Category: Ealick SE]]
+[[Category: Gabdoulkhakov AG]]
+[[Category: Kachalova GS]]
+[[Category: Mikhailov AM]]