1a7b: Difference between revisions

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-{{Seed}}
-[[Image:1a7b.png|left|200px]]
-<!--
+==ENGINEERING A MISFOLDED FORM OF CD2==
-The line below this paragraph, containing "STRUCTURE_1a7b", creates the "Structure Box" on the page.
+<StructureSection load='1a7b' size='340' side='right'caption='[[1a7b]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1a7b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A7B FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a7b OCA], [https://pdbe.org/1a7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a7b RCSB], [https://www.ebi.ac.uk/pdbsum/1a7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a7b ProSAT]</span></td></tr>
-{{STRUCTURE_1a7b|  PDB=1a7b  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CD2_RAT CD2_RAT] CD2 interacts with lymphocyte function-associated antigen (LFA-3) and CD48/BCM1 to mediate adhesion between T-cells and other cell types. CD2 is implicated in the triggering of T-cells, the cytoplasmic domain is implicated in the signaling function.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/1a7b_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1a7b ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The amino-terminal domain of CD2 has the remarkable ability to fold in two ways: either as a monomer or as an intertwined, metastable dimer. Here we show that it is possible to differentially stabilize either fold by engineering the CD2 sequence, mimicking random mutagenesis events that could occur during molecular evolution. Crystal structures of a hinge-deletion mutant, which is stable as an intertwined dimer, reveal domain rotations that enable the protein to further assemble to a tetramer. These results demonstrate that a variety of folds can be adopted by a single polypeptide sequence, and provide guidance for the design of proteins capable of further assembly.
-===ENGINEERING A MISFOLDED FORM OF CD2===
+Engineering an intertwined form of CD2 for stability and assembly.,Murray AJ, Head JG, Barker JJ, Brady RL Nat Struct Biol. 1998 Sep;5(9):778-82. PMID:9731771<ref>PMID:9731771</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1a7b" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_9731771}}, adds the Publication Abstract to the page
+*[[CD2|CD2]]
-(as it appears on PubMed at http://www.pubmed.gov), where 9731771 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_9731771}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-A7B is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A7B OCA].
-==Reference==
-<ref group="xtra">PMID:9731771</ref><references group="xtra"/>
 [[Category: Rattus norvegicus]]
-[[Category: Barker, J J.]]
+[[Category: Barker JJ]]
-[[Category: Brady, R L.]]
+[[Category: Brady RL]]
-[[Category: Head, J G.]]
+[[Category: Head JG]]
-[[Category: Murray, A J.]]
+[[Category: Murray AJ]]
-[[Category: Cd2]]
-[[Category: Domain swapping]]
-[[Category: Oligomerization]]
-[[Category: Protein evolution]]
-[[Category: Protein folding]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:21:31 2009''