2k4j: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:2k4j.jpg|left|200px]]
-<!--
+==ArsR DNA Binding Domain==
-The line below this paragraph, containing "STRUCTURE_2k4j", creates the "Structure Box" on the page.
+<StructureSection load='2k4j' size='340' side='right'caption='[[2k4j]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2k4j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_J99 Helicobacter pylori J99]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4J FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4j OCA], [https://pdbe.org/2k4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4j RCSB], [https://www.ebi.ac.uk/pdbsum/2k4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4j ProSAT]</span></td></tr>
-{{STRUCTURE_2k4j|  PDB=2k4j  |  SCENE=  }}
+</table>
+== Function ==
-===ArsR DNA Binding Domain===
+[https://www.uniprot.org/uniprot/Q9ZMR6_HELPJ Q9ZMR6_HELPJ]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-K4J is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4J OCA].
+  <jmolCheckbox>
-[[Category: Helicobacter pylori j99]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/2k4j_consurf.spt"</scriptWhenChecked>
-[[Category: Cover, T L.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Gupta, S S.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Krezel, A M.]]
+  </jmolCheckbox>
-[[Category: Acid resistance]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k4j ConSurf].
-[[Category: Dna-binding]]
+<div style="clear:both"></div>
-[[Category: Helicobacter pylori]]
+__TOC__
-[[Category: Phosphoprotein]]
+</StructureSection>
-[[Category: Response regulator]]
+[[Category: Helicobacter pylori J99]]
-[[Category: Transcription]]
+[[Category: Large Structures]]
-[[Category: Transcription regulation]]
+[[Category: Cover TL]]
+[[Category: Gupta SS]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 31 10:06:51 2008''
+[[Category: Krezel AM]]