1vmd: Difference between revisions

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New page: left|200px<br /><applet load="1vmd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vmd, resolution 2.06Å" /> '''Crystal structure of...
 
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[[Image:1vmd.gif|left|200px]]<br /><applet load="1vmd" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vmd, resolution 2.06&Aring;" />
'''Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution'''<br />


==About this Structure==
==Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution==
1VMD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima] with SO4 and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Methylglyoxal_synthase Methylglyoxal synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.3 4.2.3.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VMD OCA].  
<StructureSection load='1vmd' size='340' side='right'caption='[[1vmd]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
[[Category: Methylglyoxal synthase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[1vmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VMD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vmd OCA], [https://pdbe.org/1vmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vmd RCSB], [https://www.ebi.ac.uk/pdbsum/1vmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vmd ProSAT], [https://www.topsan.org/Proteins/JCSG/1vmd TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MGSA_THEMA MGSA_THEMA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vmd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vmd ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
[[Category: CL]]
[[Category: SO4]]
[[Category: jcsg]]
[[Category: joint center for structural genomics]]
[[Category: methylglyoxal synthase]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
[[Category: tm1185]]
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:57:28 2007''

Latest revision as of 09:40, 23 August 2023

Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolutionCrystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution

Structural highlights

1vmd is a 2 chain structure with sequence from Thermotoga maritima. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.06Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MGSA_THEMA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1vmd, resolution 2.06Å

Drag the structure with the mouse to rotate

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OCA
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