3cdi: Difference between revisions

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-{{Seed}}
-[[Image:3cdi.jpg|left|200px]]
-<!--
+==Crystal structure of E. coli PNPase==
-The line below this paragraph, containing "STRUCTURE_3cdi", creates the "Structure Box" on the page.
+<StructureSection load='3cdi' size='340' side='right'caption='[[3cdi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3cdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdi OCA], [https://pdbe.org/3cdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdi RCSB], [https://www.ebi.ac.uk/pdbsum/3cdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdi ProSAT]</span></td></tr>
-{{STRUCTURE_3cdi|  PDB=3cdi  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PNP_ECOLI PNP_ECOLI] Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction.[HAMAP-Rule:MF_01595]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdi ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of E. coli PNPase===
+==See Also==
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_18812438}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 18812438 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_18812438}}
-==About this Structure==
-CDI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA].
-==Reference==
-Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation., Shi Z, Yang WZ, Lin-Chao S, Chak KF, Yuan HS, RNA. 2008 Nov;14(11):2361-71. Epub 2008 Sep 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18812438 18812438]
 [[Category: Escherichia coli]]
-[[Category: Polyribonucleotide nucleotidyltransferase]]
+[[Category: Large Structures]]
-[[Category: Chak, K F.]]
+[[Category: Chak KF]]
-[[Category: Lin-Chao, S.]]
+[[Category: Lin-Chao S]]
-[[Category: Shi, Z.]]
+[[Category: Shi Z]]
-[[Category: Yang, W Z.]]
+[[Category: Yang WZ]]
-[[Category: Yuan, H S.]]
+[[Category: Yuan HS]]
-[[Category: Crystal structure]]
-[[Category: Kinase]]
-[[Category: Mrna turnover]]
-[[Category: Polynucleotide phosphorylase]]
-[[Category: Rna degradation]]
-[[Category: Rnase]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:03:15 2008''