2iee: Difference between revisions

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[[Image:2iee.png|left|200px]]


<!--
==Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.==
The line below this paragraph, containing "STRUCTURE_2iee", creates the "Structure Box" on the page.
<StructureSection load='2iee' size='340' side='right'caption='[[2iee]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2iee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IEE FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-->
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yckB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
{{STRUCTURE_2iee|  PDB=2iee  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iee OCA], [https://pdbe.org/2iee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iee RCSB], [https://www.ebi.ac.uk/pdbsum/2iee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iee ProSAT], [https://www.topsan.org/Proteins/NESGC/2iee TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.===
== Function ==
 
[[https://www.uniprot.org/uniprot/YCKB_BACSU YCKB_BACSU]] Probably part of a binding-protein-dependent transport system.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2IEE is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IEE OCA].  
Check<jmol>
[[Category: Bacillus subtilis]]
  <jmolCheckbox>
[[Category: Acton, T B.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/2iee_consurf.spt"</scriptWhenChecked>
[[Category: Baran, M C.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Chen, X C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Cunningham, K.]]
  </jmolCheckbox>
[[Category: Hunt, J F.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iee ConSurf].
[[Category: Jang, M.]]
<div style="clear:both"></div>
[[Category: Jayaraman, S.]]
__TOC__
[[Category: Kuzin, A P.]]
</StructureSection>
[[Category: Liu, J.]]
[[Category: Bacillus globigii migula 1900]]
[[Category: Ma, C.]]
[[Category: Large Structures]]
[[Category: Montelione, G T.]]
[[Category: Acton, T B]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Baran, M C]]
[[Category: Rost, B.]]
[[Category: Chen, X C]]
[[Category: Su, M.]]
[[Category: Cunningham, K]]
[[Category: Tong, L.]]
[[Category: Hunt, J F]]
[[Category: Xiao, R.]]
[[Category: Jang, M]]
[[Category: Jayaraman, S]]
[[Category: Kuzin, A P]]
[[Category: Liu, J]]
[[Category: Ma, C]]
[[Category: Montelione, G T]]
[[Category: Structural genomic]]
[[Category: Rost, B]]
[[Category: Su, M]]
[[Category: Tong, L]]
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Sr574]]
[[Category: Sr574]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
[[Category: X-ray]]
[[Category: Yckb]]
[[Category: Yckb]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:26:05 2008''

Latest revision as of 14:14, 31 March 2021

Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.

Structural highlights

2iee is a 2 chain structure with sequence from "bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Gene:yckB ("Bacillus globigii" Migula 1900)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

[YCKB_BACSU] Probably part of a binding-protein-dependent transport system.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2iee, resolution 2.20Å

Drag the structure with the mouse to rotate

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OCA
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