2yrr: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:2yrr.png|left|200px]]
-<!--
+==hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8==
-The line below this paragraph, containing "STRUCTURE_2yrr", creates the "Structure Box" on the page.
+<StructureSection load='2yrr' size='340' side='right'caption='[[2yrr]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2yrr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YRR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
--->
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yri|2yri]]</td></tr>
-{{STRUCTURE_2yrr|  PDB=2yrr  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yrr OCA], [http://pdbe.org/2yrr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yrr RCSB], [http://www.ebi.ac.uk/pdbsum/2yrr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yrr ProSAT], [http://www.topsan.org/Proteins/RSGI/2yrr TOPSAN]</span></td></tr>
+</table>
-===hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8===
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-YRR is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRR OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/2yrr_consurf.spt"</scriptWhenChecked>
-[[Category: Thermus thermophilus]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Goto, M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Hirotsu, K.]]
+  </jmolCheckbox>
-[[Category: Matsumura, M.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yrr ConSurf].
-[[Category: Miyahara, I.]]
+<div style="clear:both"></div>
-[[Category: Omi, R.]]
+__TOC__
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Thet8]]
+[[Category: Goto, M]]
+[[Category: Hirotsu, K]]
+[[Category: Matsumura, M]]
+[[Category: Miyahara, I]]
+[[Category: Omi, R]]
+[[Category: Structural genomic]]
 [[Category: Aminotransferase]]
 [[Category: National project on protein structural and functional analyse]]
 [[Category: Nppsfa]]
-[[Category: Riken structural genomics/proteomics initiative]]
 [[Category: Rsgi]]
-[[Category: Structural genomic]]
+[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:57:41 2008''