2p6y: Difference between revisions

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-{{Seed}}
-[[Image:2p6y.png|left|200px]]
-<!--
+==X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.==
-The line below this paragraph, containing "STRUCTURE_2p6y", creates the "Structure Box" on the page.
+<StructureSection load='2p6y' size='340' side='right'caption='[[2p6y]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2p6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6Y FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_2p6y|  PDB=2p6y  |  SCENE=  }}
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nmu|2nmu]], [[2hx0|2hx0]], [[2h6l|2h6l]]</div></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0587 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
-===X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.===
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6y OCA], [https://pdbe.org/2p6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6y RCSB], [https://www.ebi.ac.uk/pdbsum/2p6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6y ProSAT], [https://www.topsan.org/Proteins/NESGC/2p6y TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-P6Y is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA].
+Check<jmol>
-[[Category: Vibrio cholerae]]
+  <jmolCheckbox>
-[[Category: Abashidze, M.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p6y_consurf.spt"</scriptWhenChecked>
-[[Category: Acton, T B.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: B., Rost.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Baran, M C.]]
+  </jmolCheckbox>
-[[Category: Chen, C X.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6y ConSurf].
-[[Category: Cunningham, K.]]
+<div style="clear:both"></div>
-[[Category: Fang, Y.]]
+__TOC__
-[[Category: Hunt, J.]]
+</StructureSection>
-[[Category: Jayaraman, S.]]
+[[Category: Bacillo virgola del koch trevisan 1884]]
-[[Category: Kuzin, A P.]]
+[[Category: Large Structures]]
-[[Category: Liu, J.]]
+[[Category: Abashidze, M]]
-[[Category: Montelione, G T.]]
+[[Category: Acton, T B]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Baran, M C]]
-[[Category: Owens, L.]]
+[[Category: Chen, C X]]
-[[Category: Tong, L.]]
+[[Category: Cunningham, K]]
-[[Category: Wang, C.]]
+[[Category: Fang, Y]]
-[[Category: Xiao, R.]]
+[[Category: Hunt, J]]
+[[Category: Jayaraman, S]]
+[[Category: Kuzin, A P]]
+[[Category: Liu, J]]
+[[Category: Montelione, G T]]
+[[Category: Structural genomic]]
+[[Category: Owens, L]]
+[[Category: Rost, B]]
+[[Category: Tong, L]]
+[[Category: Wang, C]]
+[[Category: Xiao, R]]
 [[Category: Nesg]]
-[[Category: Northeast structural genomics consortium]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
 [[Category: Q9km02_vibch]]
-[[Category: Structural genomic]]
+[[Category: Unknown function]]
 [[Category: Vcr80]]
-[[Category: X-ray]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:42:18 2008''