3ewl: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3ewl.png|left|200px]]
-<!--
+==Crystal Structure of Conserved protein BF1870 of Unknown Function from Bacteroides fragilis==
-The line below this paragraph, containing "STRUCTURE_3ewl", creates the "Structure Box" on the page.
+<StructureSection load='3ewl' size='340' side='right'caption='[[3ewl]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ewl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EWL FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3ewl|  PDB=3ewl  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ewl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ewl OCA], [https://pdbe.org/3ewl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ewl RCSB], [https://www.ebi.ac.uk/pdbsum/3ewl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ewl ProSAT], [https://www.topsan.org/Proteins/MCSG/3ewl TOPSAN]</span></td></tr>
+</table>
-===Crystal Structure of Conserved protein BF1870 of Unknown Function from Bacteroides fragilis===
+== Function ==
+[https://www.uniprot.org/uniprot/Q5LE83_BACFN Q5LE83_BACFN]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-EWL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWL OCA].
+Check<jmol>
-[[Category: Bacteroides fragilis nctc 9343]]
+  <jmolCheckbox>
-[[Category: Cobb, G.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/3ewl_consurf.spt"</scriptWhenChecked>
-[[Category: Joachimiak, A.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Kim, Y.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+  </jmolCheckbox>
-[[Category: Tesar, C.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ewl ConSurf].
-[[Category: Alpha-beta fold]]
+<div style="clear:both"></div>
-[[Category: Mcsg]]
+__TOC__
-[[Category: Midwest center for structural genomic]]
+</StructureSection>
-[[Category: Protein structure initiative]]
+[[Category: Bacteroides fragilis NCTC 9343]]
-[[Category: Psi-2]]
+[[Category: Large Structures]]
-[[Category: Structural genomic]]
+[[Category: Cobb G]]
-[[Category: Unknown function]]
+[[Category: Joachimiak A]]
+[[Category: Kim Y]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:02:05 2008''
+[[Category: Tesar C]]