3cdh: Difference between revisions

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[[Image:3cdh.png|left|200px]]


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==Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3==
The line below this paragraph, containing "STRUCTURE_3cdh", creates the "Structure Box" on the page.
<StructureSection load='3cdh' size='340' side='right'caption='[[3cdh]], [[Resolution|resolution]] 2.69&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDH FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.69&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3cdh|  PDB=3cdh  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdh OCA], [https://pdbe.org/3cdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdh RCSB], [https://www.ebi.ac.uk/pdbsum/3cdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdh ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdh TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3CDH is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDH OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdh_consurf.spt"</scriptWhenChecked>
[[Category: Bacteria]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Keigher, L.]]
  </jmolCheckbox>
[[Category: Kim, Y.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdh ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Volkart, L.]]
__TOC__
[[Category: Dna-binding]]
</StructureSection>
[[Category: Helix-turn-hleix]]
[[Category: Large Structures]]
[[Category: Marr]]
[[Category: Ruegeria pomeroyi DSS-3]]
[[Category: Mcsg]]
[[Category: Joachimiak A]]
[[Category: Midwest center for structural genomic]]
[[Category: Keigher L]]
[[Category: Protein structure initiative]]
[[Category: Kim Y]]
[[Category: Psi-2]]
[[Category: Volkart L]]
[[Category: Structural genomic]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:48:08 2008''

Latest revision as of 04:40, 21 November 2024

Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3

Structural highlights

3cdh is a 2 chain structure with sequence from Ruegeria pomeroyi DSS-3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.69Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3cdh, resolution 2.69Å

Drag the structure with the mouse to rotate

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