2p5y: Difference between revisions

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-{{Seed}}
-[[Image:2p5y.png|left|200px]]
-<!--
+==Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD==
-The line below this paragraph, containing "STRUCTURE_2p5y", creates the "Structure Box" on the page.
+<StructureSection load='2p5y' size='340' side='right'caption='[[2p5y]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2p5y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Y FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-{{STRUCTURE_2p5y|  PDB=2p5y  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5y OCA], [https://pdbe.org/2p5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5y RCSB], [https://www.ebi.ac.uk/pdbsum/2p5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p5y TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5SKQ2_THET8 Q5SKQ2_THET8]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5y_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5y ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD===
+==See Also==
+*[[UDP-galactose 4-epimerase|UDP-galactose 4-epimerase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-P5Y is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Y OCA].
+[[Category: Large Structures]]
-[[Category: Thermus thermophilus]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: UDP-glucose 4-epimerase]]
+[[Category: Chen L]]
-[[Category: Chen, L.]]
+[[Category: Chrzas J]]
-[[Category: Chrzas, J.]]
+[[Category: Ebihara A]]
-[[Category: Ebihara, A.]]
+[[Category: Fu Z-Q]]
-[[Category: Fu, Z-Q.]]
+[[Category: Kuramitsu S]]
-[[Category: Kuramitsu, S.]]
+[[Category: Rose JP]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Shinkai A]]
-[[Category: Rose, J P.]]
+[[Category: Swindell JT]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Wang B-C]]
-[[Category: Shinkai, A.]]
+[[Category: Yokoyama S]]
-[[Category: Swindell, J T.]]
+[[Category: Zhu J]]
-[[Category: Wang, B-C.]]
-[[Category: Yokoyama, S.]]
-[[Category: Zhu, J.]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Secsg]]
-[[Category: Southeast collaboratory for structural genomic]]
-[[Category: Structural genomic]]
-[[Category: Thermus thermophilus hb8]]
-[[Category: Ttha0591]]
-[[Category: Udp-glucose 4-epimerase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:20:58 2008''