3dc7: Difference between revisions

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-{{Seed}}
-[[Image:3dc7.png|left|200px]]
-<!--
+==Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.==
-The line below this paragraph, containing "STRUCTURE_3dc7", creates the "Structure Box" on the page.
+<StructureSection load='3dc7' size='340' side='right'caption='[[3dc7]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dc7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DC7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3dc7|  PDB=3dc7  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dc7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dc7 OCA], [https://pdbe.org/3dc7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dc7 RCSB], [https://www.ebi.ac.uk/pdbsum/3dc7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dc7 ProSAT], [https://www.topsan.org/Proteins/NESGC/3dc7 TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.===
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-DC7 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DC7 OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dc7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dc7 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Lactobacillus plantarum]]
-[[Category: Abashidze, M.]]
+[[Category: Large Structures]]
-[[Category: Acton, T B.]]
+[[Category: Abashidze, M]]
-[[Category: Baran, M C.]]
+[[Category: Acton, T B]]
-[[Category: Ciccosanti, C.]]
+[[Category: Baran, M C]]
-[[Category: Hunt, J F.]]
+[[Category: Ciccosanti, C]]
-[[Category: Kuzin, A P.]]
+[[Category: Hunt, J F]]
-[[Category: Mao, L.]]
+[[Category: Kuzin, A P]]
-[[Category: Montelione, G T.]]
+[[Category: Mao, L]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Montelione, G T]]
-[[Category: Nair, R.]]
+[[Category: Structural genomic]]
-[[Category: Rost, B.]]
+[[Category: Nair, R]]
-[[Category: Seetharaman, J.]]
+[[Category: Rost, B]]
-[[Category: Tong, L.]]
+[[Category: Seetharaman, J]]
-[[Category: Vorobiev, S M.]]
+[[Category: Tong, L]]
-[[Category: Xiao, R.]]
+[[Category: Vorobiev, S M]]
-[[Category: Zhao, L.]]
+[[Category: Xiao, R]]
+[[Category: Zhao, L]]
 [[Category: Nesg lpr109 x-ray lp_3323]]
-[[Category: Northeast structural genomics consortium]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:13:39 2008''