2r39: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2r39.png|left|200px]]


<!--
==Crystal structure of FixG-related protein from Vibrio parahaemolyticus==
The line below this paragraph, containing "STRUCTURE_2r39", creates the "Structure Box" on the page.
<StructureSection load='2r39' size='340' side='right'caption='[[2r39]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r39]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R39 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2r39|  PDB=2r39  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r39 OCA], [https://pdbe.org/2r39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r39 RCSB], [https://www.ebi.ac.uk/pdbsum/2r39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r39 ProSAT], [https://www.topsan.org/Proteins/MCSG/2r39 TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of FixG-related protein from Vibrio parahaemolyticus===
== Function ==
 
[https://www.uniprot.org/uniprot/Q87KC5_VIBPA Q87KC5_VIBPA]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2R39 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R39 OCA].  
Check<jmol>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
  <jmolCheckbox>
[[Category: Abdullah, J.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r3/2r39_consurf.spt"</scriptWhenChecked>
[[Category: Bigelow, L.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Chang, C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r39 ConSurf].
[[Category: 4fe-4]]
<div style="clear:both"></div>
[[Category: Fixg-related protein]]
__TOC__
[[Category: Iron]]
</StructureSection>
[[Category: Iron-sulfur]]
[[Category: Large Structures]]
[[Category: Mcsg]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Metal-binding]]
[[Category: Abdullah J]]
[[Category: Midwest center for structural genomic]]
[[Category: Bigelow L]]
[[Category: Protein structure initiative]]
[[Category: Chang C]]
[[Category: Psi-2]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
[[Category: Vibrio parahaemolyticus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:07:04 2008''

Latest revision as of 10:46, 9 October 2024

Crystal structure of FixG-related protein from Vibrio parahaemolyticusCrystal structure of FixG-related protein from Vibrio parahaemolyticus

Structural highlights

2r39 is a 1 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.02Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87KC5_VIBPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2r39, resolution 2.02Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2r39&oldid=4185703"