3e3x: Difference between revisions

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[[Image:3e3x.png|left|200px]]


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==The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633==
The line below this paragraph, containing "STRUCTURE_3e3x", creates the "Structure Box" on the page.
<StructureSection load='3e3x' size='340' side='right'caption='[[3e3x]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3e3x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E3X FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3e3x|  PDB=3e3x  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bipA, VP0122 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e3x OCA], [https://pdbe.org/3e3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e3x RCSB], [https://www.ebi.ac.uk/pdbsum/3e3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e3x ProSAT], [https://www.topsan.org/Proteins/MCSG/3e3x TOPSAN]</span></td></tr>
===The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3E3X is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3X OCA].  
  <jmolCheckbox>
[[Category: Vibrio parahaemolyticus]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e3x_consurf.spt"</scriptWhenChecked>
[[Category: Clancy, S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Duggan, E.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e3x ConSurf].
[[Category: Mulligan, R.]]
<div style="clear:both"></div>
[[Category: Nocek, B.]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Clancy, S]]
[[Category: Duggan, E]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Mulligan, R]]
[[Category: Nocek, B]]
[[Category: Bipa protein]]
[[Category: Bipa protein]]
[[Category: Gtp-binding]]
[[Category: Gtp-binding]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Nucleotide-binding]]
[[Category: Nucleotide-binding]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi2]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:23:54 2008''

Latest revision as of 14:39, 16 February 2022

The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633

Structural highlights

3e3x is a 1 chain structure with sequence from "oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:, ,
Gene:bipA, VP0122 ("Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3e3x, resolution 1.95Å

Drag the structure with the mouse to rotate

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OCA
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