1ci0: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1ci0.png|left|200px]]
-<!--
+==PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE==
-The line below this paragraph, containing "STRUCTURE_1ci0", creates the "Structure Box" on the page.
+<StructureSection load='1ci0' size='340' side='right'caption='[[1ci0]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ci0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CI0 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-{{STRUCTURE_1ci0|  PDB=1ci0  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ci0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ci0 OCA], [https://pdbe.org/1ci0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ci0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ci0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ci0 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ci0 TOPSAN]</span></td></tr>
+</table>
-===PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE===
+== Function ==
+[https://www.uniprot.org/uniprot/PDX3_YEAST PDX3_YEAST] Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).[HAMAP-Rule:MF_01629]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-CI0 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA].
+Check<jmol>
-[[Category: Pyridoxal 5'-phosphate synthase]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ci/1ci0_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ci0 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Almo, S C.]]
+[[Category: Almo SC]]
-[[Category: Burley, S K.]]
+[[Category: Burley SK]]
-[[Category: Gerchman, S E.]]
+[[Category: Gerchman SE]]
-[[Category: Graziano, V.]]
+[[Category: Graziano V]]
-[[Category: Kycia, H.]]
+[[Category: Kycia H]]
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+[[Category: Ostrov DA]]
-[[Category: Ostrov, D A.]]
+[[Category: Shi W]]
-[[Category: Shi, W.]]
+[[Category: Studier B]]
-[[Category: Studier, B.]]
-[[Category: B6 metabolism]]
-[[Category: New york structural genomix research consortium]]
-[[Category: Nysgxrc]]
-[[Category: Oxidase]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:21:09 2008''